Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00551
         (688 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   4.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.1  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.1  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    22   5.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   5.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.5  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +2

Query: 521 MPKAKLHRPRRMPRNEQTAWRPILG*SY 604
           MP   +H P   P   Q A + I+G  Y
Sbjct: 452 MPSQYIHEPWTAPEQVQRAAKCIIGKDY 479


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 47  NHHDGRVFLWCHPFIIT--SVRDMGSRG 124
           NH  GR+   CH  + T   ++D  +RG
Sbjct: 276 NHQRGRILGGCHILVATPGRLKDFVNRG 303


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 111 WDPEAKAEYPRSNKLVI 161
           W P  KAE P SN + I
Sbjct: 95  WVPGGKAEVPPSNPIYI 111


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 5   TSVNVLLKISIN**NHHDGRVFLWCHPFIITSVRDMGSR 121
           +SV+VLL+ ++    +   RV  W  P  +  + D G R
Sbjct: 68  SSVDVLLQEAVFEGTNRKNRVLQWREPEELRRLMDFGVR 106


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 558 QEMNKPPGDP 587
           Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +1

Query: 88  HHHISQRHGIQRQKQNTHAATSSSFVKH 171
           HHH       Q    N H A + S   H
Sbjct: 323 HHHAGHHIHAQHHVVNHHVAANGSLKHH 350


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 649 PRLHNLDIIRPKMATVRL 596
           PR H LDI  P    ++L
Sbjct: 308 PRYHTLDITEPVKVFIQL 325


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,691
Number of Sequences: 336
Number of extensions: 3219
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)