Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00551
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    26   4.4  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   5.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   5.9  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   5.9  
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz...    25   7.8  
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz...    25   7.8  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +3

Query: 84  LSSSHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKPDELNVIQVEAMS 230
           L +S ++  +  +  AE     KL+  Q L+G DAK D L ++ V A S
Sbjct: 536 LYTSSENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMVFASS 583


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 260 VLKVGESRHVRLDIEFPDAPVTFTLVQGSG 349
           V+ +    HVR++  F +  ++  LV+G+G
Sbjct: 578 VMTMAREHHVRIEANFANTVLSILLVEGAG 607


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  IITSVRDMGSRGKSRIPTQQQARHSSSIVRSRCQTR*IKCDTG 217
           +   V+D+  + K R+P +Q+ R   +     C+ + IKC+ G
Sbjct: 12  LFADVKDLERKKKRRVPPEQRRRVFRAC--KHCRQKKIKCNGG 52


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 250 SFTASCSDMASTCITFNSSGLASGPNN 170
           S+  + +++  T  +F SSGL SGP N
Sbjct: 563 SYIDTTNNVLKTNSSFKSSGLTSGPRN 589


>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
           Yip12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 155 ELVAAWVFCFCLWIP 111
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
           Yip11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 155 ELVAAWVFCFCLWIP 111
           +L + W+FCFC  +P
Sbjct: 170 DLQSQWIFCFCYKLP 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,617
Number of Sequences: 5004
Number of extensions: 49767
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)