Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00550
         (780 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00004D8182 Cluster: UPI00004D8182 related cluster; n...    33   6.1  
UniRef50_UPI00006A0566 Cluster: UPI00006A0566 related cluster; n...    33   8.0  

>UniRef50_UPI00004D8182 Cluster: UPI00004D8182 related cluster; n=1;
           Xenopus tropicalis|Rep: UPI00004D8182 UniRef100 entry -
           Xenopus tropicalis
          Length = 803

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 IYQKYLERIQIRFSNNYVYCLMIIS*FQ-LLCTLLFL 227
           I+ KY E   +R +N Y+ CL++IS     LCTLLF+
Sbjct: 574 IFIKYRETPIVRANNRYLSCLLLISLMLCFLCTLLFI 610


>UniRef50_UPI00006A0566 Cluster: UPI00006A0566 related cluster;
           n=76; Xenopus tropicalis|Rep: UPI00006A0566 UniRef100
           entry - Xenopus tropicalis
          Length = 877

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +3

Query: 120 IYQKYLERIQIRFSNNYVYCLMIIS*FQ-LLCTLLFL 227
           I+ KY E   +R +N Y+ CL++IS     LCTLLF+
Sbjct: 614 IFIKYHETPIVRANNRYLSCLLLISLMLCFLCTLLFI 650


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,957,046
Number of Sequences: 1657284
Number of extensions: 13112001
Number of successful extensions: 26161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26160
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)