Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00550
(780 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292366-1|CAL23178.2| 379|Tribolium castaneum gustatory recept... 26 0.39
AM292329-1|CAL23141.2| 379|Tribolium castaneum gustatory recept... 26 0.39
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.7
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.7
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.7
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 23 2.7
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 23 3.6
AM712901-1|CAN84640.1| 205|Tribolium castaneum hypothetical pro... 23 3.6
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 22 4.8
AM292324-1|CAL23136.1| 398|Tribolium castaneum gustatory recept... 22 4.8
AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein. 21 8.4
>AM292366-1|CAL23178.2| 379|Tribolium castaneum gustatory receptor
candidate 45 protein.
Length = 379
Score = 25.8 bits (54), Expect = 0.39
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 777 THFVYDYISEFRKILIALQMYI-SC 706
TH V DY+ EF + +A Q+ + SC
Sbjct: 76 THLVLDYLDEFLIVALAFQVILNSC 100
>AM292329-1|CAL23141.2| 379|Tribolium castaneum gustatory receptor
candidate 8 protein.
Length = 379
Score = 25.8 bits (54), Expect = 0.39
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 777 THFVYDYISEFRKILIALQMYI-SC 706
TH V DY+ EF + +A Q+ + SC
Sbjct: 76 THLVLDYLDEFLIVALAFQVILNSC 100
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
LY+ G+F+++ DI W +D
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFD 138
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
LY+ G+F+++ DI W +D
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFD 138
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
LY+ G+F+++ DI W +D
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFD 138
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 23.0 bits (47), Expect = 2.7
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
LY+ G+F+++ DI W +D
Sbjct: 117 LYVPPGIFKSTCKMDITWFPFD 138
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -3
Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
LY+ G+F+++ DI W +D
Sbjct: 117 LYVPPGIFKSTCKIDITWFPFD 138
>AM712901-1|CAN84640.1| 205|Tribolium castaneum hypothetical
protein protein.
Length = 205
Score = 22.6 bits (46), Expect = 3.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 760 LHIRISKNINSFTNVHFLHDILCD 689
LH+ + + +FT++ F I CD
Sbjct: 60 LHVCFNSYMYAFTHIFFFFAICCD 83
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 114 KLIYQKYLERIQIRFSNNYVY 176
KL+ +K+L +QI +N ++
Sbjct: 4 KLVVEKFLNSLQIYLQHNQIF 24
>AM292324-1|CAL23136.1| 398|Tribolium castaneum gustatory receptor
candidate 3 protein.
Length = 398
Score = 22.2 bits (45), Expect = 4.8
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 114 KLIYQKYLERIQIRFSNNYVY 176
KL+ +K+L +QI +N ++
Sbjct: 22 KLVVEKFLNSLQIYLQHNQIF 42
>AY008296-1|AAG22858.1| 556|Tribolium castaneum Dorsal protein.
Length = 556
Score = 21.4 bits (43), Expect = 8.4
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = +1
Query: 442 CTIKNKPFQGHDHD 483
C K++PF+ H H+
Sbjct: 120 CVTKDEPFRPHPHN 133
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,424
Number of Sequences: 336
Number of extensions: 4080
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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