Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00550
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    27   4.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   5.3  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    26   7.0  

>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 632 IDGKLVALKISATIKNGFTVAKN 700
           +DG+ +ALK+SA    GFT A N
Sbjct: 672 LDGRQLALKVSANSVYGFTGATN 694


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 331 AGLFRASTTSDIHWDVWDKY 272
           A LFR ST    HW  W++Y
Sbjct: 877 AVLFRYSTDFQSHWSDWEEY 896


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 58  KVCPFVYIQLSHYCKTIPLN*STKNILKEYKLDSLIT 168
           K+   +Y+  +H C  I L   T  +L E  LD  +T
Sbjct: 332 KIGSSIYVAAAHGCWGITLGPGTGKVLSELILDGAVT 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,087,771
Number of Sequences: 5004
Number of extensions: 60539
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)