Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00550
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711...    30   1.8  
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979...    28   7.2  

>03_05_0328 -
           23170019-23170168,23170865-23170903,23171043-23171141,
           23171214-23171342,23171915-23172061,23172959-23173089,
           23173938-23174157,23174294-23174387,23174469-23174581,
           23174727-23174861,23175231-23175335,23175440-23175544,
           23176240-23176327,23176415-23176536,23176611-23176670,
           23177434-23177529,23177620-23177772,23177865-23177951,
           23179179-23179246,23179603-23179726,23180235-23180330,
           23180430-23180539,23180647-23180761,23181622-23181699,
           23181843-23181908,23182203-23182363,23182781-23183099
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 201 QLLCTLLFLAN*SYQKNHKENIRTYLSQTSQCISEVVEALNNPATIY 341
           +LLC  L+ +  S ++ H E+I    S+ S  IS+    L+N +T Y
Sbjct: 8   ELLCEKLYNSRDSAERAHAESILKCFSENSDYISQCQYILDNASTPY 54


>01_01_1214 -
           9793854-9794003,9795418-9795456,9795604-9795702,
           9795779-9795907,9796473-9796619,9797513-9797643,
           9798497-9798716,9798858-9798951,9799021-9799133,
           9799799-9799903,9800008-9800112,9800762-9800849,
           9800933-9801054,9801130-9801189,9802313-9802408,
           9802506-9802658,9802752-9802838,9803995-9804062,
           9804429-9804552,9805057-9805152,9805250-9805359,
           9805459-9805573,9806877-9806942,9807260-9807420,
           9807927-9808167
          Length = 972

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 201 QLLCTLLFLAN*SYQKNHKENIRTYLSQTSQCISEVVEALNNPATIY 341
           +LLC  L+ +  S ++ H E+     S+ S  IS+    L+N +T Y
Sbjct: 8   ELLCEKLYNSRDSAERAHAESTLKCFSENSDYISQCQYILDNASTPY 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,021
Number of Sequences: 37544
Number of extensions: 330043
Number of successful extensions: 565
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)