Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00550
(780 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1) 32 0.45
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41) 31 1.4
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7) 28 9.8
SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0) 28 9.8
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
Length = 977
Score = 32.3 bits (70), Expect = 0.45
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ D + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 722 STKLFMCDQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLC 769
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 672 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLC 719
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 747 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLC 794
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 797 STKLFMCEQYKAIYVRTVQSYLDANSTKLFMCEQYKAIYVRTVQSYLC 844
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 697 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCDQYKAIYVRTVQSYLC 744
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L C + +Y++T QSY C
Sbjct: 822 STKLFMCEQYKAIYVRTVQSYLCANSTKLFRCEQYKAIYVRTVQSYLC 869
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSY 9
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY
Sbjct: 772 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSY 817
>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
Length = 1234
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 550 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLC 597
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 575 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLC 622
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 600 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSYLC 647
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY C
Sbjct: 650 STKLFMCEQYKAIYVRTVQSYLDANSTKLFMCEQYKAIYVRTVQSYLC 697
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSYSC 3
S K+F+ + + I ++ +S++ N L C + +Y++T QSY C
Sbjct: 675 STKLFMCEQYKAIYVRTVQSYLCANSTKLFRCEQYKAIYVRTVQSYLC 722
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 143 SFKIFLVD*FSGIVLQ*WESWI*TNGQTLIICYKVPILYIKT-QSY 9
S K+F+ + + I ++ +S++ N L +C + +Y++T QSY
Sbjct: 625 STKLFMCEQYKAIYVRTVQSYLCANSTKLFMCEQYKAIYVRTVQSY 670
>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2061
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 590 SFYEKFRILWVIGCIDGKLVALKISATIKNGFTVAK 697
+FY+K VIGCIDG V L+ ++N + K
Sbjct: 1853 AFYDKHGFPGVIGCIDGTHVKLQAPDNLENDYVNRK 1888
>SB_34969| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 590 SFYEKFRILWVIGCIDGKLVALKISATIKNGFTVAK--NIMQEMYICKAINIFRN 748
+FY+K VIGCIDG V L+ +N + K + + +C +F N
Sbjct: 72 AFYDKHGFPGVIGCIDGTHVKLQAPTNHENDYVNRKGQHSINVQAVCDNKGLFTN 126
>SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 237 SYQKNHKENIRTYLSQTSQC-ISEVVEALN 323
+Y++ N RTY T QC ++E++ +LN
Sbjct: 476 NYERRTSSNRRTYEGTTEQCRVAEIIASLN 505
>SB_42460| Best HMM Match : Peptidase_C16 (HMM E-Value=4.7)
Length = 786
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 89 ESWI*TNGQTLIICYKVPILYIKTQSYS 6
ES+ T GQT I CY VP Y +SY+
Sbjct: 417 ESYTFTYGQTDICCYSVPNDYPDIRSYT 444
>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
Length = 1128
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 329 WVVQSLHNLRYTLGCLGQICSYI 261
+V Q++H + Y LGC+ SY+
Sbjct: 734 FVHQAIHTIEYCLGCISNTASYL 756
>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1203
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 133 YFW*ISLVVLFYNNGRVGYKQ 71
Y W S VVL++ NG+ GYKQ
Sbjct: 1033 YGWLDSTVVLYWINGKGGYKQ 1053
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,679,070
Number of Sequences: 59808
Number of extensions: 387922
Number of successful extensions: 633
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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