Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00550
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical pr...    31   0.92 
AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine re...    28   6.5  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>U41007-2|AAA82265.1|  248|Caenorhabditis elegans Hypothetical
           protein C33H5.6 protein.
          Length = 248

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -3

Query: 664 RYF*GHQLPIN-TPNNPKDSKFFIKTAI 584
           RYF GH++P+N    NPKD + F+ +++
Sbjct: 105 RYFDGHRMPVNFIRTNPKDREKFLSSSV 132


>AC024799-2|AAK72317.3|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein53 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/51 (25%), Positives = 29/51 (56%)
 Frame = +1

Query: 82  QLSHYCKTIPLN*STKNILKEYKLDSLITMCIV**LFLSFSYCAPCYFWPI 234
           ++ +  K + +N S K +  +++L   + +  V  +F+SFS C  C++ P+
Sbjct: 220 KIMYKLKKMTVNASKKTVKLQFELLRALIVQTVIPIFISFSPCLLCWYSPV 270


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 153 RFSNNYVYCLMIIS*FQLLCTLLFLAN*SY 242
           R  NN VY L  IS  Q +C L FLA+  Y
Sbjct: 62  RDRNNNVYLLSAISISQCMCLLFFLADFLY 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,959,575
Number of Sequences: 27780
Number of extensions: 339282
Number of successful extensions: 703
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)