Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00550
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   3.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.6  

>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 100 LYVPPGIFKSTCKMDIAWFPFD 121


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   D+ W  +D
Sbjct: 100 LYVPPGIFKSTCKMDVAWFPFD 121


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 100 LYVPPGIFKSTCKIDIAWFPFD 121


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 100 LYVPPGIFKSTCKIDITWFPFD 121


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 100 LYVPPGIFKSTCKIDITWFPFD 121


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 168 LYVPPGIFKSTCKIDITWFPFD 189


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 168 LYVPPGIFKSTCKIDITWFPFD 189


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 343 LYIVAGLFRASTTSDIHWDVWD 278
           LY+  G+F+++   DI W  +D
Sbjct: 137 LYVPPGIFKSTCKIDITWFPFD 158


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 656 KISATIKNGFTVAKNIMQEMYICKAINIF 742
           +I  T KNG  V  NIM+   +    N++
Sbjct: 333 RIQLTEKNGIDVLGNIMEASILSPNQNVY 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,068
Number of Sequences: 438
Number of extensions: 4585
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)