Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00549
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    27   2.0  
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i...    25   8.0  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   8.0  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.0  

>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 213 SPGIPSQSTTRRGVEYLHGELCS*SWHW*WQEWV 314
           S  +P Q T  R +++    L + ++HW W EW+
Sbjct: 430 SSDLPLQ-TLDRFIDWFSHHLSNFNFHWKWNEWI 462


>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
           5-->4-isomerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 217 GEVPPYGLAFPRP 179
           G VPPY + FPRP
Sbjct: 258 GHVPPYIIKFPRP 270


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 251 CGISAWGIVFLVVALVVAGMGFYYFSM 331
           CGI +     L+V  V  G+G+YY SM
Sbjct: 164 CGIESGSHWSLLVVSVEKGLGWYYDSM 190


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 359 LVCDKNKGSTLRNNRNPFLPLP 294
           ++ DKNK ST+R + N  +P P
Sbjct: 443 VIKDKNKDSTVRASNNENIPTP 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,248
Number of Sequences: 5004
Number of extensions: 63299
Number of successful extensions: 143
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)