Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00549
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0098 + 4235938-4237113                                           31   0.67 
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262...    31   0.89 
12_02_0299 - 17051570-17052474,17053542-17053755                       28   6.3  
08_02_0169 + 13645705-13645838,13646190-13646262,13646359-13646685     28   6.3  
04_01_0464 + 6006021-6006082,6006249-6006519                           28   6.3  
02_05_0635 + 30518833-30520290                                         28   6.3  
08_01_0576 - 5114636-5115151,5115254-5116183,5116898-5117614,511...    28   8.3  
07_03_1175 - 24555965-24556117,24557809-24558264,24558270-245584...    28   8.3  
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551...    28   8.3  

>09_02_0098 + 4235938-4237113
          Length = 391

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -2

Query: 223 IPGEVPPYGLAFPRPWFPLPYL-LF-PRLVATQSVASCS 113
           IPG +PP G ++P P  P P L LF P   A++  A CS
Sbjct: 202 IPGFLPPPGFSYPEPMGPPPLLSLFPPARDASRIAAVCS 240


>01_05_0705 +
           24424457-24424948,24425520-24425624,24426097-24426207,
           24426675-24426857,24427066-24427192,24427336-24427397,
           24427638-24427724,24428703-24428789,24429210-24429323,
           24429507-24429635,24429834-24429896,24430333-24430494,
           24430611-24430729,24430786-24431794
          Length = 949

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 120 DATLCVATNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTR 245
           + T  +A N   +    GN  LG   P GG S G  S STT+
Sbjct: 860 NTTNLMAVNSTGNYLNQGNSALGFGNPIGGRSTGSLSSSTTQ 901


>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 220 PGEVPPYGLAFPRPWF-PLPYLLFP 149
           P   PP     PRPWF P+P+L  P
Sbjct: 211 PWPWPPIPFCTPRPWFPPIPFLTPP 235


>08_02_0169 + 13645705-13645838,13646190-13646262,13646359-13646685
          Length = 177

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 120 DATLCVATNRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRG 251
           D T   AT  G +K          A    G +PG+P  ST RRG
Sbjct: 37  DRTEATATGEGAAKEEGDEVQPTAATAQQGGAPGMPGTSTARRG 80


>04_01_0464 + 6006021-6006082,6006249-6006519
          Length = 110

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 SKYGSGNQGLGKAKPYGGTSPGIPSQSTTRR 248
           S+ G+G+ G G     G T PG+  +   RR
Sbjct: 49  SERGTGDHGAGSGTEQGATEPGVAGRGELRR 79


>02_05_0635 + 30518833-30520290
          Length = 485

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +2

Query: 215 PGYTFTEHHKAWCGISAWGIVFLVVALVVAGMGFYYFSMCYPYFCH 352
           P  TF EH + W G     + F+   L  +G+G      C PY  H
Sbjct: 97  PFATFLEHSRVWPGFEERSVRFMTRLLERSGLG---EETCLPYAQH 139


>08_01_0576 -
           5114636-5115151,5115254-5116183,5116898-5117614,
           5119630-5119746,5119930-5120295,5121365-5121634
          Length = 971

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 223 IPGEVPPYGLAFPRPWFPLPYL 158
           +P  VPPYGL    P FPLP L
Sbjct: 735 VPPAVPPYGLQ-SMPGFPLPSL 755


>07_03_1175 -
           24555965-24556117,24557809-24558264,24558270-24558436,
           24558468-24558756,24559620-24559726,24559841-24559909,
           24560001-24560109
          Length = 449

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 147 RGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRGVEYLHG 269
           RG    G+G  G G+A  YGG   G  S S        LHG
Sbjct: 144 RGGGYAGNGGYG-GRASEYGGYGAGGYSSSGGYNATSVLHG 183


>02_05_1269 +
           35352825-35352888,35353645-35353968,35355062-35355183,
           35355361-35355482,35355651-35355755,35356402-35356765,
           35357181-35357321,35357619-35359109
          Length = 910

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 217 RVYLHRAPQGVVWNICMGNCVLSRGTGSGRN 309
           +V L  +P   +W +C GN + +R    G N
Sbjct: 223 KVQLKASPSCKIWFVCKGNLICTREVNEGLN 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,100,350
Number of Sequences: 37544
Number of extensions: 389993
Number of successful extensions: 909
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)