Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00549
         (704 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil...    29   3.0  
At2g25180.1 68415.m03011 two-component responsive regulator fami...    29   4.0  
At2g02450.2 68415.m00185 no apical meristem (NAM) family protein...    28   6.9  
At2g02450.1 68415.m00184 no apical meristem (NAM) family protein...    28   6.9  
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    27   9.2  
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa...    27   9.2  
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa...    27   9.2  
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa...    27   9.2  
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa...    27   9.2  

>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           
          Length = 458

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +3

Query: 144 NRGNSKYGSGNQGLGKAKPYGGTSPGIPSQSTTRRGVEYL 263
           N G    G G+ G G     GG  PG   +S  RRG EY+
Sbjct: 413 NVGVGMRGRGSYGYGYDYRRGGRGPGGGGRSFNRRGNEYV 452


>At2g25180.1 68415.m03011 two-component responsive regulator family
           protein / response regulator family protein contains
           Pfam profile: PF00072 response regulator receiver domain
          Length = 596

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 138 ATNRGNSKYGSGNQGLGKAKPYGG 209
           + N G+ + GSGN+G+G + P  G
Sbjct: 143 SNNNGDKRDGSGNEGVGNSDPNNG 166


>At2g02450.2 68415.m00185 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 414

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 309 IPATTSATTKNTIPHADIPHHALW 238
           +P T +A   N IP   IP++ALW
Sbjct: 370 MPQTQAALAMNMIPAGTIPNNALW 393


>At2g02450.1 68415.m00184 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain
          Length = 379

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 309 IPATTSATTKNTIPHADIPHHALW 238
           +P T +A   N IP   IP++ALW
Sbjct: 335 MPQTQAALAMNMIPAGTIPNNALW 358


>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 219 GIPSQSTTRRGVEYLHGELCS*SWHW*WQEWVSIISQCATLIF 347
           GI  +   R G E L GE+ S         W+SI+ +C+T++F
Sbjct: 254 GINVEDVQRIGWESLEGEIAS---------WISIVRRCSTVLF 287


>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 986

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 208 PPYGLAFPRPWFPLP 164
           PP G+AFPRP  P P
Sbjct: 941 PPMGMAFPRPPMPRP 955


>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 983

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 208 PPYGLAFPRPWFPLP 164
           PP G+AFPRP  P P
Sbjct: 938 PPMGMAFPRPPMPRP 952


>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 208 PPYGLAFPRPWFPLP 164
           PP G+AFPRP  P P
Sbjct: 940 PPMGMAFPRPPMPRP 954


>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
           domains PF04433: SWIRM domain, PF00249: Myb-like
           DNA-binding domain and PF00569: Zinc finger, ZZ type
          Length = 985

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 208 PPYGLAFPRPWFPLP 164
           PP G+AFPRP  P P
Sbjct: 940 PPMGMAFPRPPMPRP 954


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,876,570
Number of Sequences: 28952
Number of extensions: 321134
Number of successful extensions: 702
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)