Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00547
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    24   1.3  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   4.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   5.3  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   6.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.2  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   9.2  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   9.2  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 660 ILELVHHVLASFR*SIETFLNMLYQKSGI 574
           +L++   +L SF  ++ TFL +L+Q  GI
Sbjct: 360 MLKISRSLLTSFGGALTTFLVILFQYGGI 388


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 274 RRIRALRTLQKEFVDIEAKFYSEVHALECKYEKLTSLFMKSE 399
           RR+ +    + +F+ + A    EV AL+ KY      F+ ++
Sbjct: 166 RRVISFPFPETQFIAVTAYQNEEVTALKIKYNPFAKAFLDAK 207


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 323 RPSFTVKYMHSNAN 364
           +P FT KY H N N
Sbjct: 57  QPGFTGKYCHENIN 70


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 392 FIKRLVSFSYLHSSACTSL*NLASMSTN 309
           FIK++  F  + + AC S  NL   + N
Sbjct: 295 FIKKIQIFGIMITKACMSASNLIQRTPN 322


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 515 PQYGSILYRPS*LFFFSVITPWVETFIIIRFICAIH 408
           PQ GS+       FF S   P    F+I+ F   +H
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 515 PQYGSILYRPS*LFFFSVITPWVETFIIIRFICAIH 408
           PQ GS+       FF S   P    F+I+ F   +H
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 515 PQYGSILYRPS*LFFFSVITPWVETFIIIRFICAIH 408
           PQ GS+       FF S   P    F+I+ F   +H
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 515 PQYGSILYRPS*LFFFSVITPWVETFIIIRFICAIH 408
           PQ GS+       FF S   P    F+I+ F   +H
Sbjct: 142 PQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 580 RLLVQHIQECLNASAK 627
           R L+QH+  CLN   K
Sbjct: 133 RRLLQHLASCLNQGQK 148


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 270 SSANPRLENSSEGVCRH*GQVLQ*STCT 353
           ++  P   N S+GVC   G V   S C+
Sbjct: 429 TTKTPESGNESDGVCTKEGIVRDPSDCS 456


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 305 RSLSTLRPSFTVKYMH 352
           R + +LRP  T KY H
Sbjct: 281 RCIFSLRPGLTHKYTH 296


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 555 WIPM*RVSQTFGTTYSGM 608
           W+ +  + Q  G  YSGM
Sbjct: 263 WVDLSHMMQQLGKAYSGM 280


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 555 WIPM*RVSQTFGTTYSGM 608
           W+ +  + Q  G  YSGM
Sbjct: 263 WVDLSHMMQQLGKAYSGM 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,184
Number of Sequences: 336
Number of extensions: 3257
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)