Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00547
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 40 2e-04
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 34 0.021
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 1.9
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 4.3
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 7.5
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 7.5
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 25 9.9
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 25 9.9
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 9.9
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +1
Query: 244 SDGI--LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEK 372
S+G+ LP V+RRI LR LQK + D+E++F E+ LE Y K
Sbjct: 65 SEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAK 109
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 369 KTYKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEE 479
K Y P++++R+ +V G EP ++E D E++
Sbjct: 109 KKYAPIFKRRSEVVRGADEPTEEEIKKGEAADENEKK 145
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +2
Query: 491 GTKCCHTEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSML 619
G E +E ++ + + KGIP+FW +NV L
Sbjct: 136 GEAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSL 178
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +1
Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEK 372
L P V+ RI AL+ LQK+ I+ +F ++ LE KYEK
Sbjct: 87 LAPAVQNRITALKGLQKDCDAIQYEFRQKMLDLETKYEK 125
Score = 31.9 bits (69), Expect = 0.086
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 369 KTYKPLYEKRALIVNGTYEPNDDE 440
K Y+P++ +RA I+ G EP DDE
Sbjct: 125 KKYQPIFSRRAEIIKGVSEPVDDE 148
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 560 PNVKGIPDFWYNIFRNVSML 619
P+ KGIP+FW NV ++
Sbjct: 161 PDPKGIPEFWLTCLHNVFLV 180
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 176 HLLKSGVTRNEMIAAITNRLHAEAMASYPRMFV 274
HLL++ T +E AA +LH + + S P + +
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEPELCI 1628
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 102 ERSTVPIFNISLSPPSKFSEKKDG 31
ERS P ++S+S PS F +K+DG
Sbjct: 545 ERSLKPHTSLSISFPSDFLKKEDG 568
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 483 ARAVQNAAILRVRKRRMTRLSSLQ 554
ARA++ +A+ R R+T LSSLQ
Sbjct: 11 ARALRRSAVTAYRLNRLTCLSSLQ 34
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 541 YRASNGSQCKGYPRLLVQHIQEC 609
YR SNG + Y L V+ IQ C
Sbjct: 489 YRLSNGKSIQYYSTLFVRLIQSC 511
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 375 YKPLYEKRALIVNGTYEPNDDECLNPWRDDTEE 473
Y+ L + R L ++GT E N+DE P ++E
Sbjct: 267 YEVLKKNRILQIDGTIEDNEDEKKPPVDTPSDE 299
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 219 PSQIAFMQKRWHPTPECSSANPRLENSSEGVCR 317
P+++ M W+P PE S A + S+ +C+
Sbjct: 497 PNEVLCMSPFWYPIPEASVA--VVNEDSKNICK 527
>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +3
Query: 375 YKPLYEKRALIVNGTYEPNDDECLNPW 455
Y+ Y +R+ + + +P+ CL+PW
Sbjct: 143 YRNGYGRRSFRIEESVQPDTMSCLSPW 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,625
Number of Sequences: 5004
Number of extensions: 54286
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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