Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00547
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031...    47   1e-05
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255...    46   3e-05
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071...    42   3e-04
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746...    38   0.007
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442...    30   1.9  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    29   3.4  

>05_06_0234 -
           26602660-26602728,26602814-26602988,26603077-26603120,
           26603204-26603381,26603468-26603652,26603737-26603801,
           26603985-26604066,26604342-26604434,26605096-26605191,
           26605312-26605355,26605467-26605530
          Length = 364

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 20/40 (50%), Positives = 28/40 (70%)
 Frame = +1

Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           L P VR+R+  LR +Q +  D+EAKF+ E  ALE KY+K+
Sbjct: 53  LEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKM 92



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 369 KTYKPLYEKRALIVNGTYE 425
           K Y+PLY KR  IVNG  E
Sbjct: 91  KMYEPLYSKRYEIVNGVVE 109


>06_01_0356 +
           2557127-2557193,2557272-2557315,2557433-2557528,
           2559259-2559351,2559450-2559540,2559617-2559678,
           2559754-2559938,2560022-2560199,2560293-2560336,
           2560440-2560635,2560728-2560745,2560955-2561005
          Length = 374

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +1

Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           L PNVR+R+  LR +Q +  +IE KF+ E  ALE KY+KL
Sbjct: 54  LSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKL 93


>06_03_0740 -
           24006485-24006629,24006821-24006864,24006954-24007122,
           24007226-24007413,24007572-24007634,24007992-24008084,
           24009837-24009932,24010024-24010067,24010184-24010357,
           24010764-24010974
          Length = 408

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = +1

Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           L P+VR+R+  L  +Q +  ++E KF+ E  ALE KY+KL
Sbjct: 160 LAPSVRKRVDVLMEIQSQHDELEVKFFEEKAALEAKYQKL 199



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 551 PMDPNVKGIPDFWYNIFRNVSML 619
           P+    KG+PDFW N  +N  +L
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEIL 224


>01_06_0465 -
           29573972-29574110,29574300-29574343,29574434-29574602,
           29574707-29574894,29575081-29575145,29575257-29575311,
           29575502-29575594,29576035-29576130,29576259-29576302,
           29576419-29576431
          Length = 301

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +1

Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           L P VR+R+  L  +Q +  ++EAKF  E  ALE  Y+KL
Sbjct: 36  LAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKL 75


>07_01_0593 +
           4417753-4417759,4418240-4419698,4419819-4421301,
           4421378-4421419,4421420-4421584,4421669-4421864,
           4421955-4422066,4422154-4422301,4422417-4422614,
           4422710-4422866,4422882-4422988,4423084-4423245,
           4423314-4423562,4423676-4423810
          Length = 1539

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = +3

Query: 405 IVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQWIPM*RVSQT 584
           I NG+ + ND EC     DD  +E+LAR +Q     ++ K+R  R ++ Q     ++S+ 
Sbjct: 299 ISNGSLKINDAECKEVSEDD--DEKLARLLQQEEEWKMMKQRGKRGTTSQKNVYIKISEA 356

Query: 585 FGTTYSGMSQCFSEMMQEHDEPI 653
                  +   +    QE DE I
Sbjct: 357 EIANDYPLPAYYKPSSQEMDEYI 379


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +3

Query: 390 EKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAA 506
           E+RA I+N   E + D C++P  +  EE ++ +AV + +
Sbjct: 733 EERARIINEDPEVHVDPCMSPDYESAEELDVKKAVDSTS 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,007
Number of Sequences: 37544
Number of extensions: 361857
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)