Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00547
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_53240| Best HMM Match : Metallothionein (HMM E-Value=6.1)           29   2.6  
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)                   29   3.4  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   6.0  
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 28   7.9  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
 Frame = +3

Query: 375 YKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRK-----RRMTR 539
           +KP YEKR  I +G  EP D+EC   W  D E+E+ A   +      V K         +
Sbjct: 164 FKPFYEKRRNIASGGVEPTDEECR--WPSDAEDEDEAEEKEEKEATEVSKLSGEVEEKVK 221

Query: 540 LSSLQWIPM*RVSQT------FGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
           +   + I   ++ +       F  T     +  SEM+QEHDEPILK L D
Sbjct: 222 IDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHD 271



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 307 EFVDIEAKFYSEVHALECKY-EKLTSLFMK 393
           E   +E KFY EVHALECKY EK    + K
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEK 170


>SB_53240| Best HMM Match : Metallothionein (HMM E-Value=6.1)
          Length = 90

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 500 CCHTEGEEKKDDKAIEPPMDPNVKGIPDFW-YNIFRN 607
           CCHT+G + + + A  P        +PD W   IFR+
Sbjct: 47  CCHTDGGDTQSNCAPHPTKGIGCTDVPDKWGRKIFRD 83


>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1847

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 369 KTYKPLYEKRALIVNGTYEPNDDECLNPW 455
           KT++ +Y KR L  NG +      CL+ W
Sbjct: 630 KTFRMVYNKRVLFPNGVHSLPYGHCLSTW 658


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 348 CTRMQI*KTYKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKR 527
           C + +  K + P   K   ++    EP+   C+   RD+ EEEE  +  ++A ++  ++ 
Sbjct: 248 CKKGRSFKKFCPDGLKFNALIKSCDEPSKVNCVTKQRDEEEEEEKVKDDEDADLMNYKRT 307

Query: 528 R 530
           R
Sbjct: 308 R 308


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 417 TYEPNDDECLNPWRDDTEEEEL 482
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 254 MPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 162
           +PS +HE D   PL F +GS +  T + L H
Sbjct: 209 LPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,055,760
Number of Sequences: 59808
Number of extensions: 429427
Number of successful extensions: 1055
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)