Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00547
(673 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39553-1|AAB07898.1| 370|Drosophila melanogaster nucleosome ass... 38 0.012
BT001479-1|AAN71234.1| 370|Drosophila melanogaster LD21576p pro... 38 0.012
AE013599-3725|AAF47097.1| 370|Drosophila melanogaster CG5330-PA... 38 0.012
AY058402-1|AAL13631.1| 375|Drosophila melanogaster GH17085p pro... 31 1.1
AL109630-5|CAB65874.1| 375|Drosophila melanogaster EG:BACR7A4.1... 31 1.1
AE014298-125|AAF45565.2| 375|Drosophila melanogaster CG3708-PA ... 31 1.1
>U39553-1|AAB07898.1| 370|Drosophila melanogaster nucleosome
assembly protein NAP-1 protein.
Length = 370
Score = 37.9 bits (84), Expect = 0.012
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 253 ILPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYE 369
+LP V+ RI L+ LQ + ++IEA+F+ +V+ LE KY+
Sbjct: 48 MLPAPVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQ 86
Score = 33.5 bits (73), Expect = 0.27
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 375 YKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQ 554
Y+PL++KR I+ G +P +++ W+ E E +A R LSSL+
Sbjct: 89 YQPLFDKRREIIEGKVDPAEEK--PQWK---EPESSTDNEADAEHFR------EALSSLK 137
Query: 555 WIPM-*RVSQTFGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
IP + F T + SEM+Q HDEP ++ L D
Sbjct: 138 SIPKDAKGIPGFWLTVFRNTAIMSEMVQPHDEPAIRKLID 177
Score = 29.1 bits (62), Expect = 5.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 563 NVKGIPDFWYNIFRNVSML 619
+ KGIP FW +FRN +++
Sbjct: 142 DAKGIPGFWLTVFRNTAIM 160
>BT001479-1|AAN71234.1| 370|Drosophila melanogaster LD21576p
protein.
Length = 370
Score = 37.9 bits (84), Expect = 0.012
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 253 ILPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYE 369
+LP V+ RI L+ LQ + ++IEA+F+ +V+ LE KY+
Sbjct: 48 MLPAPVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQ 86
Score = 33.5 bits (73), Expect = 0.27
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 375 YKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQ 554
Y+PL++KR I+ G +P +++ W+ E E +A R LSSL+
Sbjct: 89 YQPLFDKRREIIEGKVDPAEEK--PQWK---EPESSTDNEADAEHFR------EALSSLK 137
Query: 555 WIPM-*RVSQTFGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
IP + F T + SEM+Q HDEP ++ L D
Sbjct: 138 SIPKDAKGIPGFWLTVFRNTAIMSEMVQPHDEPAIRKLID 177
Score = 29.1 bits (62), Expect = 5.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 563 NVKGIPDFWYNIFRNVSML 619
+ KGIP FW +FRN +++
Sbjct: 142 DAKGIPGFWLTVFRNTAIM 160
>AE013599-3725|AAF47097.1| 370|Drosophila melanogaster CG5330-PA
protein.
Length = 370
Score = 37.9 bits (84), Expect = 0.012
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +1
Query: 253 ILPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYE 369
+LP V+ RI L+ LQ + ++IEA+F+ +V+ LE KY+
Sbjct: 48 MLPAPVQNRIVFLKNLQLQHLNIEAQFFEDVYKLEQKYQ 86
Score = 33.5 bits (73), Expect = 0.27
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Frame = +3
Query: 375 YKPLYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQ 554
Y+PL++KR I+ G +P +++ W+ E E +A R LSSL+
Sbjct: 89 YQPLFDKRREIIEGKVDPAEEK--PQWK---EPESSTDNEADAEHFR------EALSSLK 137
Query: 555 WIPM-*RVSQTFGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
IP + F T + SEM+Q HDEP ++ L D
Sbjct: 138 SIPKDAKGIPGFWLTVFRNTAIMSEMVQPHDEPAIRKLID 177
Score = 29.1 bits (62), Expect = 5.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 563 NVKGIPDFWYNIFRNVSML 619
+ KGIP FW +FRN +++
Sbjct: 142 DAKGIPGFWLTVFRNTAIM 160
>AY058402-1|AAL13631.1| 375|Drosophila melanogaster GH17085p
protein.
Length = 375
Score = 31.5 bits (68), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 551 PMDPNVKGIPDFWYNIFRNVSML 619
P+ P G+P FW +F+NV +L
Sbjct: 170 PVSPTTLGVPRFWLTVFQNVPLL 192
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 250 GILPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKY 366
G L V+ RIRALR Q + V I +F+ EV+ LE ++
Sbjct: 76 GQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRF 114
Score = 30.7 bits (66), Expect = 1.9
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +3
Query: 384 LYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQWIP 563
L++ R I+ G+ EP + W +D ++ N + ++R++ + +P
Sbjct: 121 LFDARRDILEGSVEP-PIQTEKTWPEDPQDALYLDFGNNEELRQLRQKLAPVSPTTLGVP 179
Query: 564 M*RVSQTFGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
F T SE++Q+HDEP+L+ L D
Sbjct: 180 R------FWLTVFQNVPLLSELVQDHDEPLLESLMD 209
>AL109630-5|CAB65874.1| 375|Drosophila melanogaster EG:BACR7A4.18
protein.
Length = 375
Score = 31.5 bits (68), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 551 PMDPNVKGIPDFWYNIFRNVSML 619
P+ P G+P FW +F+NV +L
Sbjct: 170 PVSPTTLGVPRFWLTVFQNVPLL 192
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 250 GILPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKY 366
G L V+ RIRALR Q + V I +F+ EV+ LE ++
Sbjct: 76 GQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRF 114
Score = 30.7 bits (66), Expect = 1.9
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +3
Query: 384 LYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQWIP 563
L++ R I+ G+ EP + W +D ++ N + ++R++ + +P
Sbjct: 121 LFDARRDILEGSVEP-PIQTEKTWPEDPQDALYLDFGNNEELRQLRQKLAPVSPTTLGVP 179
Query: 564 M*RVSQTFGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
F T SE++Q+HDEP+L+ L D
Sbjct: 180 R------FWLTVFQNVPLLSELVQDHDEPLLESLMD 209
>AE014298-125|AAF45565.2| 375|Drosophila melanogaster CG3708-PA
protein.
Length = 375
Score = 31.5 bits (68), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 551 PMDPNVKGIPDFWYNIFRNVSML 619
P+ P G+P FW +F+NV +L
Sbjct: 170 PVSPTTLGVPRFWLTVFQNVPLL 192
Score = 31.1 bits (67), Expect = 1.4
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 250 GILPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKY 366
G L V+ RIRALR Q + V I +F+ EV+ LE ++
Sbjct: 76 GQLAEPVQNRIRALRHNQLQQVRISEQFFREVYELERRF 114
Score = 30.7 bits (66), Expect = 1.9
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = +3
Query: 384 LYEKRALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRRMTRLSSLQWIP 563
L++ R I+ G+ EP + W +D ++ N + ++R++ + +P
Sbjct: 121 LFDARRDILEGSVEP-PIQTEKTWPEDPQDALYLDFGNNEELRQLRQKLAPVSPTTLGVP 179
Query: 564 M*RVSQTFGTTYSGMSQCFSEMMQEHDEPILKCLQD 671
F T SE++Q+HDEP+L+ L D
Sbjct: 180 R------FWLTVFQNVPLLSELVQDHDEPLLESLMD 209
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,141,062
Number of Sequences: 53049
Number of extensions: 609946
Number of successful extensions: 1539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1536
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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