Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00547
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    46   2e-05
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    44   1e-04
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta...    43   2e-04
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,...    31   0.53 
At3g44710.1 68416.m04809 expressed protein contains Pfam profile...    29   2.1  

>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/40 (50%), Positives = 29/40 (72%)
 Frame = +1

Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           L P VR+R+  LR +Q ++ ++EAKF+ E  ALE KY+KL
Sbjct: 47  LTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKL 86



 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 369 KTYKPLYEKRALIVNGTYE 425
           K Y+PLY KR  IVNG  E
Sbjct: 85  KLYQPLYTKRYEIVNGVVE 103


>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = +1

Query: 241 RSDGI--LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           RSD +  L PNVR+R+ ALR +Q +  ++EAKF  E   LE KY+ L
Sbjct: 40  RSDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTL 86



 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +3

Query: 375 YKPLYEKRALIVNGTYE----PNDDECLNPWRDDTEEEE 479
           Y+PLY KR  IVNGT E    P DD  ++   + T EE+
Sbjct: 87  YQPLYVKRYEIVNGTTEVELAPEDDTKVDQGEEKTAEEK 125


>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 374

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +1

Query: 256 LPPNVRRRIRALRTLQKEFVDIEAKFYSEVHALECKYEKL 375
           L P +RRR+  LR +Q +  +IE KF  E  ALE KY+KL
Sbjct: 47  LTPKIRRRVEVLREIQGKHDEIETKFREERAALEAKYQKL 86



 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 369 KTYKPLYEKRALIVNGTYEPN---DDECLNPWRDDTEEEE 479
           K Y+PLY KR  IVNG  E     +D  ++   + T EE+
Sbjct: 85  KLYQPLYNKRYEIVNGATEVEGAPEDAKMDQGDEKTAEEK 124


>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 848

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 402 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAILRVRKRR 530
           ++  G     +DE L PW  + EE+   R V    +  ++KRR
Sbjct: 190 MLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRR 232


>At3g44710.1 68416.m04809 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 504

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 476 RVSSGGTKCCHTEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLQRNDAR 637
           R S+GG KCC  +   K ++K  +   +P V  +  + +   +N+ M++ +  R
Sbjct: 39  RESAGGKKCCIFKISHKPENKKYKAAYEPRVVSLGPYHHG-KKNLQMIEEHKLR 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,582,126
Number of Sequences: 28952
Number of extensions: 289912
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)