Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00546
(416 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 115 3e-27
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 111 6e-26
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.38
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 2.0
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 25 3.6
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 25 4.7
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.2
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 25 6.2
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 115 bits (277), Expect = 3e-27
Identities = 50/73 (68%), Positives = 61/73 (83%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 215 MFQLPKLYAKLHY 253
+ +PKLY KL Y
Sbjct: 61 EYTIPKLYIKLQY 73
Score = 44.4 bits (100), Expect = 7e-06
Identities = 24/43 (55%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Frame = +1
Query: 256 VSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 375
VSCAIHS+VVR RS++ RRIRT PP+ + RD + P AV +
Sbjct: 75 VSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDGKKVNPTAVAK 117
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 111 bits (266), Expect = 6e-26
Identities = 48/73 (65%), Positives = 60/73 (82%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD+++ASVY
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 215 MFQLPKLYAKLHY 253
+ +PK+Y KL Y
Sbjct: 61 EYAIPKIYVKLQY 73
Score = 44.0 bits (99), Expect = 1e-05
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Frame = +1
Query: 256 VSCAIHSKVVRNRSKKDRRIRT-PPKSNFPRDMSR--PQAVQR 375
VSCAIH++VVR RS++ RRIRT PP+ + RD R P A+ +
Sbjct: 75 VSCAIHARVVRVRSREGRRIRTPPPRVRYNRDGKRVNPAAIAK 117
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.38
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 116 RCVPKDKAIKKFVIRNIVEAAAVRDI 193
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 26.2 bits (55), Expect = 2.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 161 NIVEAAAVRDINDASVYPMFQLPKL-YAKLHYSCHAPSTAKLSGTD 295
NIV+ R +ND + + P++ YA L++ C PS+ L+ D
Sbjct: 1482 NIVKFLGNRIMNDMREFVLLAFPQIQYALLNW-CQPPSSISLASID 1526
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 3.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 281 LSGTDRRKTEESVLLPRVTSLGT 349
++ DR +TE SVL RVT +G+
Sbjct: 1 MAAVDRSRTEISVLSDRVTDVGS 23
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.0 bits (52), Expect = 4.7
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -2
Query: 196 VNISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRS 17
+N +R+ +PN FDSL + + R +++G N++ +S + + ++N S
Sbjct: 472 LNNFQQRKLTPLPNSMSFDSLNEFESERNTPSTYGQNISPLPQFSSPSLSSDAFLTNSNS 531
Query: 16 GE 11
E
Sbjct: 532 SE 533
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -2
Query: 91 FNVTTSMLGASSITAL---TSHVSNLRSGE 11
FN+ TS +SS+T+ +SH+SN + +
Sbjct: 100 FNILTSNFASSSVTSAPTQSSHISNFTNSQ 129
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -2
Query: 175 RFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASS 56
+ +DV + +L + + P+A+C + ++ TS++ SS
Sbjct: 115 KVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSS 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,253
Number of Sequences: 5004
Number of extensions: 25508
Number of successful extensions: 61
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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