Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00546
(416 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 118 1e-27
01_06_1293 - 36050847-36051304,36052343-36052826 28 3.5
12_01_0236 - 1775941-1776034,1776185-1776504,1776569-1776786,177... 27 6.0
11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534... 27 6.0
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 27 6.0
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 27 8.0
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 8.0
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 27 8.0
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486... 27 8.0
04_04_0500 - 25677767-25680850 27 8.0
04_01_0363 + 4754650-4755912 27 8.0
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 118 bits (285), Expect = 1e-27
Identities = 57/93 (61%), Positives = 70/93 (75%), Gaps = 4/93 (4%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ +A V+
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 215 MFQLPKLYAKLHY--SC--HAPSTAKLSGTDRR 301
+ LPKLYAK+H+ SC HA S +RR
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRR 93
Score = 37.5 bits (83), Expect = 0.004
Identities = 18/36 (50%), Positives = 26/36 (72%)
Frame = +1
Query: 256 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQ 363
VSCAIH+ +VR RS+++RR R PP+ F R + P+
Sbjct: 75 VSCAIHAHIVRVRSRENRRDRRPPE-RFRRRVPDPR 109
>01_06_1293 - 36050847-36051304,36052343-36052826
Length = 313
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 194 NDASVYPMFQLPKLYAKLHYSCHAPSTAKLSGT 292
N+AS YP Q P LY + H STA+ T
Sbjct: 175 NNASYYPQQQTPLLYPGMEVCPHDKSTAQPPAT 207
>12_01_0236 -
1775941-1776034,1776185-1776504,1776569-1776786,
1777315-1777723
Length = 346
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 203 SVYPMFQLPKLYAKLHYSCHAPSTAKLSGTDRRKTEES-VLLPR 331
S+ P+ L K++A L + PST S TDR+ +S V+L R
Sbjct: 124 SLLPLLALLKIFAGLANLIYGPSTVFGSRTDRQLANDSGVMLLR 167
>11_01_0658 +
5342508-5343602,5343697-5343764,5343994-5344042,
5344217-5344333,5344438-5344506,5344631-5344725,
5345580-5345658,5346499-5346563,5347368-5347461,
5347675-5347744,5348363-5349357
Length = 931
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 267 HPQQSCQEQIEERQKNPYSSQE 332
+PQQS Q+Q EE+Q P SS +
Sbjct: 616 NPQQSQQQQPEEQQSIPQSSNQ 637
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 202 GIVNISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFN--VTTSMLGASSIT 50
GI + D +YD + LF+ L+ P A +SH F+ V T + S+ T
Sbjct: 439 GIDMVDDGMPYYDAMDDNLFNDLLSSVQPSAGSSSHAFSGPVLTQEVNNSTYT 491
>09_04_0042 -
14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = -2
Query: 190 ISDRRRFYDVPNHELFDSLVFWHAPRAVCASHGFNVTTSMLGASSITALTSHVSNLRS 17
+S+ R NH D+ H P A+C H ++ + LG+ +T ++L+S
Sbjct: 622 VSEHREVESPANHIKGDNSFHSHHPNALCNVHSVSLGNN-LGSMGVTPYYDPCNSLQS 678
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +2
Query: 38 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 187
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 94 REMHKLRAVRAKRQGYQKVRD*EHRRSGGGQR 189
R+ K ++ R K +G +K R EH R GG+R
Sbjct: 101 RKREKTQSDRDKDKGKEKERMEEHERRPGGER 132
>05_01_0554 +
4856131-4856605,4858051-4858098,4860611-4860792,
4861409-4863136
Length = 810
Score = 26.6 bits (56), Expect = 8.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -2
Query: 184 DRRRFYDVPNHELFD 140
DR FYD PN+E FD
Sbjct: 354 DRTLFYDEPNYEAFD 368
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 26.6 bits (56), Expect = 8.0
Identities = 20/47 (42%), Positives = 24/47 (51%)
Frame = +2
Query: 140 IKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYSCHAPSTAK 280
+K FV + AAAV DA+V+ L LYAK C PS AK
Sbjct: 338 MKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK----CGCPSDAK 380
>04_01_0363 + 4754650-4755912
Length = 420
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 2 GTRFTGSEVRNMTRKRRNGGRAKHGRGHV 88
G R G TR+RR GGR+ R HV
Sbjct: 10 GEREKGRRQAGPTRQRRTGGRSTVDRDHV 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,512,146
Number of Sequences: 37544
Number of extensions: 197393
Number of successful extensions: 567
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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