Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00546
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             138   1e-33
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   27   8.2  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   8.2  

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  138 bits (335), Expect = 1e-33
 Identities = 68/93 (73%), Positives = 75/93 (80%), Gaps = 4/93 (4%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
           MT+KR NGGR+KHGRGHVK VRCTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY 
Sbjct: 1   MTKKRCNGGRSKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYE 60

Query: 215 MFQLPKLYAKLHY--SC--HAPSTAKLSGTDRR 301
           ++ LPKLY KLHY  SC  H+      S  DR+
Sbjct: 61  VYALPKLYVKLHYCVSCAIHSKVVRNRSKEDRK 93



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +1

Query: 256 VSCAIHSKVVRNRSKKDRRIRTPP 327
           VSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 75  VSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 35   MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
            M  ++ N    K+ R     +  TNC      +K   K   +NI+   +  D  D+S+YP
Sbjct: 1819 MLYRQNNWYYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYP 1878


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 122 VPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 235
           + K K  +  VI   + A AV D++  +VYP+F  P L
Sbjct: 47  IVKKKRNEGKVIYLFIGALAVTDVSLLAVYPLFAFPVL 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,637,633
Number of Sequences: 59808
Number of extensions: 212780
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)