Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00546
(416 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 120 4e-28
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 29 1.8
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 29 1.8
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 27 5.5
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 27 5.5
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 27 5.5
U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of ... 27 7.2
U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of ... 27 7.2
U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of ... 27 7.2
AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gat... 27 7.2
>Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical
protein F39B2.6 protein.
Length = 117
Score = 120 bits (289), Expect = 4e-28
Identities = 55/73 (75%), Positives = 58/73 (79%)
Frame = +2
Query: 35 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
MT KRRN GR K RGHV +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y
Sbjct: 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60
Query: 215 MFQLPKLYAKLHY 253
+ LPKLY KLHY
Sbjct: 61 QYALPKLYHKLHY 73
Score = 41.5 bits (93), Expect = 2e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1
Query: 256 VSCAIHSKVVRNRSKKDRRIRTPP 327
++CAIHSKVVRNRS++ RR R PP
Sbjct: 75 IACAIHSKVVRNRSREARRDRNPP 98
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 83 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 178
H+K ++C NC+ +K+++ +IR+ E A
Sbjct: 80 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDA 111
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 28.7 bits (61), Expect = 1.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 83 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAA 178
H+K ++C NC+ +K+++ +IR+ E A
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDA 229
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 258 VMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 374
V + P +S ++ + QKN Y+S E GH TS+ +A+
Sbjct: 377 VYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 26 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 127
+R + K+ +G A G ++ RC N A C P
Sbjct: 83 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 26 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 127
+R + K+ +G A G ++ RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183
>U64843-16|AAX55689.1| 442|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform c protein.
Length = 442
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 218 FQLPKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 361
F++ L+ +L + A S A L R T E+ LLP++ S TC ++
Sbjct: 77 FEIDILFTQLWHDS-ALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123
>U64843-15|AAF98227.2| 489|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform a protein.
Length = 489
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 218 FQLPKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 361
F++ L+ +L + A S A L R T E+ LLP++ S TC ++
Sbjct: 77 FEIDILFTQLWHDS-ALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123
>U64843-14|AAM45353.1| 475|Caenorhabditis elegans Modulation of
locomotion defectiveprotein 1, isoform b protein.
Length = 475
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 218 FQLPKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 361
F++ L+ +L + A S A L R T E+ LLP++ S TC ++
Sbjct: 77 FEIDILFTQLWHDS-ALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123
>AF303088-1|AAG36975.1| 489|Caenorhabditis elegans serotonin-gated
chloride channel protein.
Length = 489
Score = 26.6 bits (56), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 218 FQLPKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVH 361
F++ L+ +L + A S A L R T E+ LLP++ S TC ++
Sbjct: 77 FEIDILFTQLWHDS-ALSFAHLPACKRNITMETRLLPKIWSPNTCMIN 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,422,600
Number of Sequences: 27780
Number of extensions: 152893
Number of successful extensions: 425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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