Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00546
         (416 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   2.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   2.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   2.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.7  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNC 112
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNC 112
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNC 112
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   GTRFTGSEVRNMTRKRRNGGRAKHGRGHVKAV 97
           G+RFT  +    ++K+R    AK  R   K +
Sbjct: 590 GSRFTIYKANKASKKKREKSSAKKERKATKTL 621


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 182 VRDINDASVYPMFQLPKLYAKLHYSCH 262
           +  I +  V P FQ  +L  + +  CH
Sbjct: 398 IHTIPEVKVTPRFQAKRLKEEANIRCH 424


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 393 FNNKSLPLHCLWT*H 349
           F+  S+P H LW  H
Sbjct: 102 FHEMSIPNHYLWLYH 116


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 264 RHPQQSCQEQIEERQKNPYSSQE 332
           + PQQ  Q+Q +++Q+     Q+
Sbjct: 438 QQPQQQQQQQQQQQQQQQQQQQQ 460


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,902
Number of Sequences: 438
Number of extensions: 1945
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)