Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00546
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) seve...   120   3e-28
At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B)           118   1e-27
At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)           118   1e-27
At3g60200.1 68416.m06726 expressed protein hypothetical proteins...    28   2.2  
At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase, pu...    27   3.8  
At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal hydrolase-r...    27   5.1  
At3g19270.1 68416.m02444 cytochrome P450 family protein similar ...    27   6.7  
At3g11890.2 68416.m01458 expressed protein                             26   8.9  
At3g11890.1 68416.m01457 expressed protein                             26   8.9  

>At3g56340.1 68416.m06264 40S ribosomal protein S26 (RPS26C) several
           40S ribosomal protein S26
          Length = 130

 Score =  120 bits (290), Expect = 3e-28
 Identities = 57/93 (61%), Positives = 69/93 (74%), Gaps = 4/93 (4%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
           MT KRRNGGR KH RGHVK +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 215 MFQLPKLYAKLHY--SC--HAPSTAKLSGTDRR 301
            + LPKLYAK  Y  SC  H+      S T+RR
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRR 93



 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = +1

Query: 256 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 372
           VSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 75  VSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQ 113


>At2g40590.1 68415.m05007 40S ribosomal protein S26 (RPS26B) 
          Length = 131

 Score =  118 bits (285), Expect = 1e-27
 Identities = 56/93 (60%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 215 MFQLPKLYAKLHY--SC--HAPSTAKLSGTDRR 301
            + LPKLYAK  Y  SC  H+      S T+RR
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRR 93



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = +1

Query: 256 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 372
           VSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 75  VSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQ 113


>At2g40510.1 68415.m04999 40S ribosomal protein S26 (RPS26A)
          Length = 133

 Score =  118 bits (285), Expect = 1e-27
 Identities = 56/93 (60%), Positives = 68/93 (73%), Gaps = 4/93 (4%)
 Frame = +2

Query: 35  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 214
           MT KRRNGGR KH RGHV  +RC+NC +C PKDKAIK+F++RNIVE AA+RD+ +ASVY 
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 215 MFQLPKLYAKLHY--SC--HAPSTAKLSGTDRR 301
            + LPKLYAK  Y  SC  H+      S T+RR
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRR 93



 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = +1

Query: 256 VSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQ 372
           VSCAIHS VVR RS+ +RR+RTPP     R    P+  Q
Sbjct: 75  VSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQ 113


>At3g60200.1 68416.m06726 expressed protein hypothetical proteins
           At2g44600 - Arabidopsis thaliana, EMBL:AAC27462
          Length = 305

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 250 LLVSCAIHSKVVRNRSKKDRRIRTPPKSNFPRDMSRPQAVQR 375
           L  S A+ + V  N+SKK      PP   FPR +S P   +R
Sbjct: 28  LAASAAVSAAVEDNQSKKSNNNNHPPLLIFPRSVS-PYVTRR 68


>At1g09420.1 68414.m01054 glucose-6-phosphate 1-dehydrogenase,
           putative / G6PD, putative similar to SP|Q43839
           Glucose-6-phosphate 1-dehydrogenase, chloroplast
           precursor (EC 1.1.1.49) (G6PD) {Solanum tuberosum};
           contains Pfam profiles PF02781: Glucose-6-phosphate
           dehydrogenase C-terminal, PF00479: Glucose-6-phosphate
           dehydrogenase NAD binding domain; gc exon splice site at
           20574 is based on protein alignment, and is not
           confirmed experimentally
          Length = 625

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 227 PKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLLPRVTSLGTCHVHRQ 367
           P L+A L+YS + P    + G  R+   +  L   + S  TC V  Q
Sbjct: 172 PALFA-LYYSGYLPEDVAIFGVSRKNLTDEDLRSIIASTLTCRVDHQ 217


>At1g52450.1 68414.m05921 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 92  AVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKL 235
           ++ C  C   VP+    +K  +       AVRD+ + ++ P F +P L
Sbjct: 572 SILCDRCEEIVPEISLARKIFV------CAVRDVFEGALLPTFDVPDL 613


>At3g19270.1 68416.m02444 cytochrome P450 family protein similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 468

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 247 PLLVSCAIHSKVVRNRSKKDRRIRTPPKS 333
           P+L+ C +  +V+ ++ KK+ R + PP S
Sbjct: 10  PILILCLLLVRVIVSKKKKNSRGKLPPGS 38


>At3g11890.2 68416.m01458 expressed protein
          Length = 527

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 LPKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLL 325
           +P L    HYS   PST++     R KT ++ L+
Sbjct: 267 MPSLPVPEHYSLQKPSTSQSQAELRAKTRKATLV 300


>At3g11890.1 68416.m01457 expressed protein
          Length = 500

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 LPKLYAKLHYSCHAPSTAKLSGTDRRKTEESVLL 325
           +P L    HYS   PST++     R KT ++ L+
Sbjct: 267 MPSLPVPEHYSLQKPSTSQSQAELRAKTRKATLV 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,003,999
Number of Sequences: 28952
Number of extensions: 143383
Number of successful extensions: 381
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)