Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00545
         (793 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2EYL0 Cluster: Putative uncharacterized protein; n=2; ...    36   1.2  
UniRef50_A0DTP9 Cluster: Chromosome undetermined scaffold_63, wh...    33   8.2  

>UniRef50_A2EYL0 Cluster: Putative uncharacterized protein; n=2;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 218

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +3

Query: 297 GFKSSC*SLEFVKKLHLNKSILRFIIHIDST*TQCYRDIKTMLRYFFQ-STHKQIITFKK 473
           G +  C S+ +   L L K I+RF I  ++T TQ Y +  T L Y F   TH  I  F +
Sbjct: 52  GGRGHC-SIPYAASLGLYKLIIRFKISDNATKTQRYSEKVTSLLYMFPVETHLIISLFLQ 110

Query: 474 IPTKILQVLAASNLE 518
              K LQ L   N E
Sbjct: 111 TQCKNLQSLLTPNGE 125


>UniRef50_A0DTP9 Cluster: Chromosome undetermined scaffold_63, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_63, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 1095

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = +3

Query: 396  QCYRDIKTMLRYFFQSTHKQIITFKKIPTKILQVLAASNLEVTNHCELHLISTPISVEDR 575
            Q Y D K    Y++Q    QI  F K+   ILQ +  S++ +T++     +S  +  +D+
Sbjct: 1008 QIYAD-KAQYLYYYQRPWPQIDCFVKVWNNILQYIILSSVIITSYG----LSNSLVFQDK 1062

Query: 576  SK*LYYFLSYTMIS 617
            S+ ++ F+S+ ++S
Sbjct: 1063 SQ-IFVFVSFMLLS 1075


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,068,016
Number of Sequences: 1657284
Number of extensions: 12266811
Number of successful extensions: 22065
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22064
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)