Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00545
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0431 - 9327167-9327226,9327347-9327474,9327594-9327709,932...    29   4.2  

>09_02_0431 -
           9327167-9327226,9327347-9327474,9327594-9327709,
           9327816-9327895,9328787-9328912,9329676-9329856,
           9330514-9330578,9330655-9330915
          Length = 338

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 114 NCNLLLISQLFNGCYYTYKP 55
           NCNL++I  LF   Y+ YKP
Sbjct: 304 NCNLVIIDFLFRHGYHVYKP 323


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,321
Number of Sequences: 37544
Number of extensions: 302476
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)