Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00545
         (793 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)                       29   5.7  
SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)          28   7.5  

>SB_50535| Best HMM Match : PPE (HMM E-Value=1.1)
          Length = 299

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 381 DST*TQCYRDIKTMLRYFFQSTHKQIITF-KKIPTKILQVLAASNLEVTNHCELHLISTP 557
           DS   +C   I   LR+        + TF KK  T+ L    +S L+ +NHC  +L S P
Sbjct: 214 DSVPFRCVAKISLKLRHVLSFKAILLTTFYKKRFTRPLSDQPSSELQTSNHCLGYLCSFP 273


>SB_33902| Best HMM Match : Metallothionein (HMM E-Value=0.71)
          Length = 361

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 399 CYRDIKTMLRYFFQSTHKQIITFKKIPTKILQVLAASNLEV-TNHCE 536
           C   I+ +L +   +THK +IT   +PT+I Q +  S  ++ T+H E
Sbjct: 63  CRSVIRDVLFHAHTATHKLVITGDDVPTEIHQGVVISRDDISTSHEE 109


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,736,514
Number of Sequences: 59808
Number of extensions: 374485
Number of successful extensions: 628
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)