Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00545
         (793 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical p...    30   1.7  

>U50191-10|AAK31550.2| 1146|Caenorhabditis elegans Hypothetical
           protein T14B4.1 protein.
          Length = 1146

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = -2

Query: 405 GSIVFKWNQCGL*TVILTYLSVIF*RIPAISKTT*TLDSSVLR-NSRMKLAMITDYMNNN 229
           G + F+W +  L   +L     I  R+ AI K+  ++D+S+L+ N  +  ++I   +NNN
Sbjct: 134 GKLNFQWLKVALFRAMLHTNGWI--RVWAIEKSI-SIDASILKDNDHVITSLIIPNLNNN 190

Query: 228 YVYWQ 214
            V+W+
Sbjct: 191 DVFWR 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,940
Number of Sequences: 27780
Number of extensions: 305612
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)