Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00545
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.35 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   7.5  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 441 STHKQIITFKKIPTKILQVLAASNLEVTNHCELH 542
           ST    +  +K P +   V A++     NHCELH
Sbjct: 99  STIAVCVCMRKCPRRHRPVCASNGKIYANHCELH 132



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 439 NQHTNRSLHLKRFLLKFSK 495
           N H  R+LH+ R  LK SK
Sbjct: 157 NAHIRRTLHMNRTSLKTSK 175


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -1

Query: 394 VQVESMWIINRNIDLFKCNFLTNSSDQQDDLNPR*FSSEK 275
           V ++  W      DL  CN L    +   D+N   F+ ++
Sbjct: 167 VSIKDPWFPRHASDLDNCNHLMTKFEPDLDMNHPGFADKE 206


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 358 IDLFKCNFLTNSSDQQDD 305
           I +F  +FLTN+  ++DD
Sbjct: 384 ITMFDLDFLTNACKKKDD 401


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,282
Number of Sequences: 438
Number of extensions: 4104
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)