Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00544
         (797 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    26   0.30 
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    26   0.30 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    26   0.30 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    24   1.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   3.7  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   3.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   3.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.9  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    22   6.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   6.5  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   6.5  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    21   8.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    21   8.6  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 549 TSD-PDAQQ---RWLSMTY--PVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 695
           TSD P+AQQ    + +  Y  P     S   P   ++V YH Q++ QD+  +NT+
Sbjct: 26  TSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTE 80


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 549 TSD-PDAQQ---RWLSMTY--PVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 695
           TSD P+AQQ    + +  Y  P     S   P   ++V YH Q++ QD+  +NT+
Sbjct: 26  TSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTE 80


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = +3

Query: 549 TSD-PDAQQ---RWLSMTY--PVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 695
           TSD P+AQQ    + +  Y  P     S   P   ++V YH Q++ QD+  +NT+
Sbjct: 26  TSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTE 80


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 422 ELRQLKQSLQHEQSFKSHLHDWVNMHFD 339
           E R L + +    SF  + H W+ ++FD
Sbjct: 283 EFRYLMKGIDRADSFNFNPHKWLLVNFD 310


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/12 (66%), Positives = 12/12 (100%)
 Frame = +3

Query: 3   ARGRVDVAHLLK 38
           ARGR+DV+HL++
Sbjct: 262 ARGRMDVSHLVE 273


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 542 CSNK*SRCSTTLALYDISSGHRPISLQTCTRETSCLSFTERGTRFGAGE 688
           C  + S+ S+        SG RP   + C +  S  S   +  R  +GE
Sbjct: 55  CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 103



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/53 (26%), Positives = 20/53 (37%)
 Frame = +2

Query: 530 RPLCCSNK*SRCSTTLALYDISSGHRPISLQTCTRETSCLSFTERGTRFGAGE 688
           R + C+   S+ +   A     SG +P     C R  S  S      R  +GE
Sbjct: 23  RCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGE 75


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 542 CSNK*SRCSTTLALYDISSGHRPISLQTCTRETSCLSFTERGTRFGAGE 688
           C  + S+ S+        SG RP   + C +  S  S   +  R  +GE
Sbjct: 311 CDRRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGE 359



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 14/53 (26%), Positives = 20/53 (37%)
 Frame = +2

Query: 530 RPLCCSNK*SRCSTTLALYDISSGHRPISLQTCTRETSCLSFTERGTRFGAGE 688
           R + C+   S+ +   A     SG +P     C R  S  S      R  +GE
Sbjct: 279 RCIDCNKSFSQAANLTAHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGE 331


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 727 CPSACRATNAGPVSVHGRQQH 789
           CP+   A   GP  VH R+++
Sbjct: 293 CPNCQEAERLGPAGVHLRKKN 313


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 590 ISSGHRPISLQTCTRETSCLSFTERGTRFGAGEHRHG 700
           + +G RP   + C R+   ++   R  R   GE  +G
Sbjct: 31  LHTGERPYRCEHCDRQFVQVANLRRHLRVHTGERPYG 67


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 457 CPKPNDTQTELSKT 498
           CPK   T TELSK+
Sbjct: 734 CPKNRPTFTELSKS 747


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 590 ISSGHRPISLQTCTRETSCLSFTERGTRFGAGEHRHG 700
           + +G RP   + C R+   ++   R  R   GE  +G
Sbjct: 184 LHTGERPYRCEHCDRQFVQVANLRRHLRVHTGERPYG 220


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 719 DGAVESHHVCVHRLRILFH 663
           DG   + +VC HR R +F+
Sbjct: 369 DGTCGNGYVCEHRWRQIFN 387


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 719 DGAVESHHVCVHRLRILFH 663
           DG   + +VC HR R +F+
Sbjct: 370 DGTCGNGYVCEHRWRQIFN 388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,783
Number of Sequences: 336
Number of extensions: 3772
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)