BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00544 (797 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy... 28 1.3 SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 5.4 SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 26 5.4 SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy... 25 9.5 SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 9.5 >SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 136 Score = 28.3 bits (60), Expect = 1.3 Identities = 9/31 (29%), Positives = 18/31 (58%) Frame = -2 Query: 769 PTQARHLSHDMHWDMYATVQLKVTMSVFTGS 677 P + H++HW + T + ++T+S F G+ Sbjct: 18 PKTEKQSDHELHWALNETEKKRITLSEFRGT 48 >SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosaccharomyces pombe|chr 1|||Manual Length = 1162 Score = 26.2 bits (55), Expect = 5.4 Identities = 12/47 (25%), Positives = 22/47 (46%) Frame = +3 Query: 609 LSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCD 749 +S Y P V + + ++S ++ + N Y+S C+SCD Sbjct: 1114 ISIYPPARFGDVTEVTKVLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160 >SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 886 Score = 26.2 bits (55), Expect = 5.4 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = -1 Query: 290 TQISATIK*DLLTWQDLMKQSKNA*KINNDQTSKTSTPAHLFIKF*AM 147 TQ+SA+ K ++ ++ K+ +N ND S T P+ + + A+ Sbjct: 395 TQLSASAKTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHRLEAL 442 >SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 396 Score = 25.4 bits (53), Expect = 9.5 Identities = 12/42 (28%), Positives = 20/42 (47%) Frame = +3 Query: 504 CWELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPV 629 CW G G+ GLF A S W + + + +S++ P+ Sbjct: 131 CWSSGTGLAGLFGA--SSYLVMTTWFNFSVRSTLIISSFLPL 170 >SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr 3|||Manual Length = 1647 Score = 25.4 bits (53), Expect = 9.5 Identities = 8/18 (44%), Positives = 11/18 (61%) Frame = +3 Query: 498 FLCWELGDGVPGLFAALT 551 FL W +G +PG+ A T Sbjct: 486 FLTWSMGSQIPGIITAFT 503 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,040,247 Number of Sequences: 5004 Number of extensions: 58103 Number of successful extensions: 156 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 152 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 156 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 389395636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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