Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00544
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    28   1.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   5.4  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   9.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   9.5  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 769 PTQARHLSHDMHWDMYATVQLKVTMSVFTGS 677
           P   +   H++HW +  T + ++T+S F G+
Sbjct: 18  PKTEKQSDHELHWALNETEKKRITLSEFRGT 48


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 609  LSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCD 749
            +S Y P     V    + + ++S  ++  +   N    Y+S C+SCD
Sbjct: 1114 ISIYPPARFGDVTEVTKVLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 290 TQISATIK*DLLTWQDLMKQSKNA*KINNDQTSKTSTPAHLFIKF*AM 147
           TQ+SA+ K   ++  ++ K+ +N     ND  S T  P+ +  +  A+
Sbjct: 395 TQLSASAKTSAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHRLEAL 442


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 504 CWELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPV 629
           CW  G G+ GLF A  S       W + +    + +S++ P+
Sbjct: 131 CWSSGTGLAGLFGA--SSYLVMTTWFNFSVRSTLIISSFLPL 170


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 498 FLCWELGDGVPGLFAALT 551
           FL W +G  +PG+  A T
Sbjct: 486 FLTWSMGSQIPGIITAFT 503


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,247
Number of Sequences: 5004
Number of extensions: 58103
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)