Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00544
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0993 - 8377720-8377800,8379924-8380406,8380622-8381132,838...    31   1.4  
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338...    29   4.3  
04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370     29   4.3  
09_06_0280 + 22010270-22011407,22011890-22013097                       29   5.7  
06_01_1185 + 10183666-10184469                                         29   5.7  
02_04_0648 - 24716249-24717841                                         29   5.7  
07_03_0722 + 20946201-20947327,20949531-20950791                       28   7.5  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    28   7.5  

>07_01_0993 -
           8377720-8377800,8379924-8380406,8380622-8381132,
           8381174-8381586
          Length = 495

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 663 VEQDSEPVNTDMVTFNCTVAYMSQCM-SCDKCRACVGPWAP 782
           ++Q ++P+NTDM   N   A + Q +       ACV PWAP
Sbjct: 312 LDQLNKPLNTDMAGNNHDDALLRQALLDVAGAGACVVPWAP 352


>08_01_0381 -
           3382316-3382459,3382872-3382907,3383323-3383429,
           3383518-3383587,3383839-3384663,3384748-3385044,
           3385175-3385501,3385760-3386046,3386728-3386896
          Length = 753

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +3

Query: 567 QQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 695
           Q+  +    P ++D S Y P P +    +++ +E  + P+N +
Sbjct: 164 QEEKIERPSPDEVDRSGYSPTPSRSTPDNMEPIEDGNTPLNRE 206


>04_04_0714 + 27496678-27497392,27499080-27499138,27499179-27499370
          Length = 321

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 785 CWRPWTDTGPAFVARHALGHVRDGAVESHHVCVHRLRIL 669
           C  PW D    F     + H+  G  E+H+ C+  L+ L
Sbjct: 225 CGSPWDDDADDFFFGGWMAHLHLGICENHYFCMRVLKSL 263


>09_06_0280 + 22010270-22011407,22011890-22013097
          Length = 781

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 547 RAAKRPGTPSPSSQHRKFLIVLSA-CHLVWDTYRRNYSTRC 428
           +AA     P+P    R   I  ++ CH V D YR  Y  RC
Sbjct: 277 QAANNWSCPTPGEARRSACISNNSYCHNVTDNYRSGYVCRC 317


>06_01_1185 + 10183666-10184469
          Length = 267

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 606 RCPLDMS*RASVVEHLDHLLEQQRGLVLHHQAP 508
           R P+D     +      HLL Q R L+LHH+ P
Sbjct: 183 RRPIDKPPLGNPASKKSHLLRQSRELLLHHRRP 215


>02_04_0648 - 24716249-24717841
          Length = 530

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 FKSHLHDWVNMHFDTTLAHIASLHAYAIGTTQISA 276
           F SH      +H   TLAH+  LHA+A+ T + +A
Sbjct: 7   FSSHGDFVAALHRCATLAHLKQLHAHAVVTGRAAA 41


>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 330 CTYSFIACVCYWHHTNQRDD*IRPSHMARFNETIKE 223
           C    + C C+    N  DD I P H A  N   KE
Sbjct: 108 CCNGLLLCRCFQPGPNNSDDEIEPFHYAVCNPATKE 143



 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -3

Query: 330 CTYSFIACVCYWHHTNQRDD*IRPSHMARFNETIKE 223
           C    + C C+    N  DD I P H A  N   KE
Sbjct: 526 CCNGLLLCRCFQPGPNNSDDEIEPFHYAVCNPATKE 561


>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 455 ISTQLQHSLYKELRQLKQSLQHEQSFKSHLHDWVNMHFDTTLAHIASLHAYAIGTTQISA 276
           + TQ+ H   KEL+   Q++ HE+ F   L D  + + +       SL + A G+T I  
Sbjct: 168 LETQMDHKEEKELQSYLQNILHERRFLLVLDDVCDENTNGWEELRTSLASGASGSTVIVT 227

Query: 275 T 273
           T
Sbjct: 228 T 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,764,184
Number of Sequences: 37544
Number of extensions: 377715
Number of successful extensions: 979
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)