Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00544
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)                  29   5.8  
SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)                 28   7.6  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   7.6  
SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)                  28   7.6  

>SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)
          Length = 353

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 603 IDLSAYRPVPEKQVVYHLQSVEQDS-EPVNTDMVTFNCTVAYMS--QCMS 743
           ++LSAY     +Q  Y  QSVEQ + E ++ ++ ++ C    +S  +C S
Sbjct: 209 VELSAYECQSVEQSAYECQSVEQSAYECLSVELSSYECQSVELSAYECQS 258


>SB_31184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 338 TTLAHIASLHAYAIGTTQISATIK 267
           TT+A I+ LHA+A+GT    AT++
Sbjct: 370 TTMALISMLHAWALGTDGNGATVR 393


>SB_49126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 338 TTLAHIASLHAYAIGTTQISATIK 267
           TT+A I+ LHA+A+GT    AT++
Sbjct: 261 TTMALISMLHAWALGTDGNGATVR 284


>SB_32094| Best HMM Match : RVT_1 (HMM E-Value=1.9e-12)
          Length = 642

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 338 TTLAHIASLHAYAIGTTQISATIK 267
           TT+A I+ LHA+A+GT    AT++
Sbjct: 288 TTMALISMLHAWALGTDGNGATVR 311


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 525 VPGLFAALTSDPDAQQRWLSMTYPVDIDL-SAYRPVPEKQVVYHLQ 659
           V GL+  LT+  + +  W S+  P  + L S Y P  E    Y+L+
Sbjct: 595 VNGLYRVLTAPMETKVDWKSLVVPACLPLTSEYNPYKESLRSYYLE 640


>SB_1234| Best HMM Match : RVT_1 (HMM E-Value=3.1e-08)
          Length = 210

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 338 TTLAHIASLHAYAIGTTQISATIK 267
           TT+A I+ LHA+A+GT    AT++
Sbjct: 32  TTMALISMLHAWALGTDGNGATVR 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,278,722
Number of Sequences: 59808
Number of extensions: 451053
Number of successful extensions: 1188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)