Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00544
         (797 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical pr...    28   6.7  
AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    28   8.9  

>U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical
           protein C02B8.3 protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 555 DPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTF 707
           D D   +  +M+ PV   L +Y P P+    +H+  V+ DS+   T +  F
Sbjct: 22  DSDDLSKGHTMSDPV-YQLCSYMPSPKDYNKFHVNGVQMDSDDYTTILTMF 71


>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 597 VDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCDKC 755
           VD DLS   PVP+  V  H+++    S  + +DM+   C   Y  Q +   KC
Sbjct: 233 VDPDLSQGIPVPDFDV--HVKN-STISTSIGSDMMDRKCRYVYYLQSVMSKKC 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,179,828
Number of Sequences: 27780
Number of extensions: 343077
Number of successful extensions: 895
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)