Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00544
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23530.1 68415.m02808 expressed protein ; expression supporte...    32   0.38 
At1g15410.1 68414.m01846 aspartate-glutamate racemase family con...    30   2.0  
At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family prot...    28   6.2  

>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/59 (28%), Positives = 35/59 (59%)
 Frame = +3

Query: 504 CWELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSE 680
           C  +GDG+P +   +  DP ++ + +S   P+D D ++   + + QV+Y L++ +QD +
Sbjct: 435 CAHIGDGLPKIQEWIGQDPTSETKPVSYLIPIDDDQTS---LVDAQVMY-LETPKQDKQ 489


>At1g15410.1 68414.m01846 aspartate-glutamate racemase family
           contains Pfam profile PF|01177 Aspartate-glutamate
           racemase family; contains TIGRFAM TIGR00035: aspartate
           racemase; similar to aspartate racemase
           (GI:5458794){Pyrococcus abyssi}
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
 Frame = +3

Query: 489 IKNFLCWELGDGVPGLFAALTSDPDAQQRWL---SMTYPVDIDLSAYRPVPEKQVVYHLQ 659
           +K  + W   DG   L   L SDP   +  L     +YP         PV  K +V +L+
Sbjct: 96  VKKLVDWSSNDGKSSLPFVLCSDPALNKELLLYEENSYPSLYHREESTPVDPKLIVENLR 155

Query: 660 SVEQDSEPVNTDMVTFNCTVAYM 728
           +  +  E     ++   C +A++
Sbjct: 156 NKRRYLERCGAKLILMPCHIAHI 178


>At1g67830.1 68414.m07742 GDSL-motif lipase/hydrolase family protein
           similar to early nodulin ENOD8 [Medicago sativa]
           GI:304037, elicitor-induced glycoprotein iEP4 [Daucus
           carota] GI:1911765, lanatoside 15'-O-acetylesterase
           [Digitalis lanata] GI:3688284; contains Pfam profile
           PF00657: Lipase/Acylhydrolase with GDSL-like motif
          Length = 372

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -1

Query: 494 FDSSVCVSFGLGHISTQLQHSLYKELRQLKQSL 396
           FDS  CVS  L H++ Q  H+L + + +L+ SL
Sbjct: 239 FDSHGCVS-PLNHLAQQFNHALKQAVIELRSSL 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,890,304
Number of Sequences: 28952
Number of extensions: 304197
Number of successful extensions: 828
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)