Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00543
         (771 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.5  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   2.0  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   6.2  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.2  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 589 LINAFVVSIGLVGIVTMDFPACFFPVCK 672
           L+N   +++G+VG    D    FF V K
Sbjct: 366 LLNYIFIAVGIVGSACTDVEQKFFQVSK 393


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 73  YFLFSLFLMLRDSALALSNSETTAAVLLFGF 165
           +FL SLF ++    + L + +  A VLLF F
Sbjct: 137 FFLRSLFAIMLPLGILLISQDVIANVLLFIF 167


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 665 TGKKHAGKSIVTIPTNPIDT 606
           TG+ H G ++V +  N I+T
Sbjct: 68  TGEVHVGTTLVKVNINSINT 87


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 147 CPFVWFQLDSLILTCSD 197
           C F++F +  L L C D
Sbjct: 184 CAFIFFNMHLLFLLCLD 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,283
Number of Sequences: 336
Number of extensions: 3807
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)