Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00543
         (771 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   3.9  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    26   6.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.1  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 46  AIDTQSIYGYFLFSLFLMLRDSALALS 126
           A+ T SIY  FL +  L  + SALA+S
Sbjct: 304 AVGTSSIYYSFLLATLLSTKPSALAIS 330


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 625 GIVTMDFPACFFPVCKMKIEH 687
           G    D P C FP C  +I+H
Sbjct: 24  GFAGDDIPKCLFPTCVGRIKH 44


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 420 ENPDTLHKVECTL 382
           +NPD  HKV CTL
Sbjct: 782 DNPDPQHKVSCTL 794


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,772
Number of Sequences: 5004
Number of extensions: 62700
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)