BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00543 (771 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 29 4.1 09_02_0147 - 4968360-4969151,4969959-4970369,4970856-4970921,497... 28 9.5 >06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104, 25541673-25541751,25542151-25542238,25542330-25542600, 25542676-25542718,25542801-25542904,25543374-25543790 Length = 2068 Score = 29.1 bits (62), Expect = 4.1 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -2 Query: 665 TGKKHAGKSIVTIPTNPIDTTNALISLH*HTGMHAKLKQHP 543 +G H GK V P NP+D +NA + + + +HP Sbjct: 533 SGSAHPGKEEVLSPKNPVDNSNASLVVEPIEVLEKSGTEHP 573 >09_02_0147 - 4968360-4969151,4969959-4970369,4970856-4970921, 4972164-4972233,4972311-4972369 Length = 465 Score = 27.9 bits (59), Expect = 9.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 344 FIICLINGAKFPRSVHSTLWRVSGFSRS 427 F C++ G K P + + WR+SG+S S Sbjct: 155 FDSCILQGWKDPIAALTAAWRISGWSES 182 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,693,004 Number of Sequences: 37544 Number of extensions: 364700 Number of successful extensions: 466 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 460 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 466 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2075009728 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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