Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00543
         (771 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h...    30   8.0  
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly...    30   8.0  
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog...    30   8.0  
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog...    30   8.0  
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog...    30   8.0  
AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-speci...    30   8.0  

>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
            heparan sulfate  proteoglycan core protein protein.
          Length = 4393

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 214  AYLSVASEQVRIKLSS*NQTKGQLLSFHC*IGPGLSHVASEREKKGNN 71
            AY + +++ +RI+ SS    +GQ L  +C + PG SH      K+G +
Sbjct: 2336 AYPAGSTQPIRIEPSSSQVAEGQTLDLNC-VVPGQSHAQVTWHKRGGS 2382


>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
            protein.
          Length = 4391

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 214  AYLSVASEQVRIKLSS*NQTKGQLLSFHC*IGPGLSHVASEREKKGNN 71
            AY + +++ +RI+ SS    +GQ L  +C + PG SH      K+G +
Sbjct: 2334 AYPAGSTQPIRIEPSSSQVAEGQTLDLNC-VVPGQSHAQVTWHKRGGS 2380


>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
            2 protein.
          Length = 4391

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 214  AYLSVASEQVRIKLSS*NQTKGQLLSFHC*IGPGLSHVASEREKKGNN 71
            AY + +++ +RI+ SS    +GQ L  +C + PG SH      K+G +
Sbjct: 2334 AYPAGSTQPIRIEPSSSQVAEGQTLDLNC-VVPGQSHAQVTWHKRGGS 2380


>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
            2 protein.
          Length = 4391

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 214  AYLSVASEQVRIKLSS*NQTKGQLLSFHC*IGPGLSHVASEREKKGNN 71
            AY + +++ +RI+ SS    +GQ L  +C + PG SH      K+G +
Sbjct: 2334 AYPAGSTQPIRIEPSSSQVAEGQTLDLNC-VVPGQSHAQVTWHKRGGS 2380


>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
            perlecan protein.
          Length = 4370

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 214  AYLSVASEQVRIKLSS*NQTKGQLLSFHC*IGPGLSHVASEREKKGNN 71
            AY + +++ +RI+ SS    +GQ L  +C + PG SH      K+G +
Sbjct: 2313 AYPAGSTQPIRIEPSSSQVAEGQTLDLNC-VVPGQSHAQVTWHKRGGS 2359


>AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-specific
           heparan sulfate proteoglycan core protein precursor
           protein.
          Length = 2331

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -3

Query: 214 AYLSVASEQVRIKLSS*NQTKGQLLSFHC*IGPGLSHVASEREKKGNN 71
           AY + +++ +RI+ SS    +GQ L  +C + PG SH      K+G +
Sbjct: 274 AYPAGSTQPIRIEPSSSQVAEGQTLDLNC-VVPGQSHAQVTWHKRGGS 320


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,151,903
Number of Sequences: 237096
Number of extensions: 2192639
Number of successful extensions: 3016
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3009
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)