Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00543
         (771 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-3584|AAN14009.1| 3703|Drosophila melanogaster CG5794-PB...    29   9.3  
AE014297-3583|AAF56319.2| 3912|Drosophila melanogaster CG5794-PD...    29   9.3  

>AE014297-3584|AAN14009.1| 3703|Drosophila melanogaster CG5794-PB,
            isoform B protein.
          Length = 3703

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 484  ILINLHSSLHFNPEHRSKSRP*ESRYPPQG*MHTPWEFGAIN 359
            ILIN H S+   P       P    +P +G  HTPW  GA N
Sbjct: 3214 ILINCHLSVANAPNAIGPLGP---YFPRRGAKHTPWPLGAKN 3252


>AE014297-3583|AAF56319.2| 3912|Drosophila melanogaster CG5794-PD,
            isoform D protein.
          Length = 3912

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -3

Query: 484  ILINLHSSLHFNPEHRSKSRP*ESRYPPQG*MHTPWEFGAIN 359
            ILIN H S+   P       P    +P +G  HTPW  GA N
Sbjct: 3423 ILINCHLSVANAPNAIGPLGP---YFPRRGAKHTPWPLGAKN 3461


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,280,335
Number of Sequences: 53049
Number of extensions: 659443
Number of successful extensions: 823
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)