Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00542
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.35 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   5.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 580 DQSSTRAKTFLSTAQVVDD-QVFAIVSDEKVIKELEAEDEDVVLFKNFEEKRVKY 741
           D S + A   +  AQ+V+  Q   I+S+++++ E +  D  V LFK F++++  Y
Sbjct: 389 DSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADC-DFVVKLFKTFKDRKYLY 442


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 534 RTYRCQYCYCIWFLFG 581
           R  +C Y YC+W  FG
Sbjct: 67  RQLKC-YMYCLWEQFG 81


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = -2

Query: 505 SRGASLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSHTVALGEILFLSC 353
           ++G  L   P   +  LTT  ++ +  IP+E     S +T  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +1

Query: 697 DVVLFKN--FEEKRVKYEDEESLRSAQCLG 780
           D   F N  +EE  V+YE  + + + Q  G
Sbjct: 282 DTEQFSNPQYEENNVQYEGSQDILNTQSFG 311


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 525 TG*RTYRCQYC 557
           TG + Y+C+YC
Sbjct: 115 TGEKPYQCEYC 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,834
Number of Sequences: 438
Number of extensions: 3667
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)