Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6ET68 Cluster: Putative uncharacterized protein; n=1; ...    34   4.7  
UniRef50_UPI0000F20E33 Cluster: PREDICTED: hypothetical protein;...    33   8.3  
UniRef50_Q4PA90 Cluster: Predicted protein; n=1; Ustilago maydis...    33   8.3  

>UniRef50_A6ET68 Cluster: Putative uncharacterized protein; n=1;
           unidentified eubacterium SCB49|Rep: Putative
           uncharacterized protein - unidentified eubacterium SCB49
          Length = 526

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -2

Query: 411 DNCHNMIFFLLSIAHLKNYP*FYIKYLIMSGVGQFLQY 298
           ++  N I  LL ++H K YP FYIKY++ +   +F  Y
Sbjct: 327 EHFENGINLLLELSHKKEYPEFYIKYILYTRNLEFAYY 364


>UniRef50_UPI0000F20E33 Cluster: PREDICTED: hypothetical protein;
           n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 264

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = -3

Query: 788 NLVLSDYRSHDINNTIPIHLET*SLNHNCIVHRPPQSSNRRHDCLAEEPGMVLVPTHVAS 609
           N +LS     D+NN+ P+H+E    +++C+V   P S+  +H    E       P     
Sbjct: 194 NRLLSSISVSDLNNSFPLHMECLDGSYSCVVSN-PISNQTQHVNNTEH----CQPCSDVG 248

Query: 608 PDFQISSASNLFN 570
            D ++ S  + FN
Sbjct: 249 KDLKVDSTESTFN 261


>UniRef50_Q4PA90 Cluster: Predicted protein; n=1; Ustilago
           maydis|Rep: Predicted protein - Ustilago maydis (Smut
           fungus)
          Length = 371

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 17/62 (27%), Positives = 33/62 (53%)
 Frame = -3

Query: 701 IVHRPPQSSNRRHDCLAEEPGMVLVPTHVASPDFQISSASNLFNKHTHLTHITFCVIQE* 522
           +  R P  S+  ++ LAEE   +++P   ASP F++   + +F ++  +  +TF  +   
Sbjct: 69  LAFRLPPRSSFFNNALAEESTTIVIPLFDASPRFELDRHA-IFERNRRIVSLTFGDVSRV 127

Query: 521 CI 516
           CI
Sbjct: 128 CI 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,319,349
Number of Sequences: 1657284
Number of extensions: 15275825
Number of successful extensions: 28522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28519
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)