Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    26   7.1  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.4  

>SPAC6C3.06c |||P-type ATPase, calcium
            transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/47 (23%), Positives = 26/47 (55%)
 Frame = -2

Query: 468  NQLVIMFLYLKQHVTVLIYDNCHNMIFFLLSIAHLKNYP*FYIKYLI 328
            N+L+++ L +      ++      ++ ++LS+  L NY  F +K+L+
Sbjct: 950  NELIMVALQINTWEQTIVMSELLTLMMYILSVPFLTNY--FELKFLL 994


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 453 MFLYLKQHVTVLIYDNCHNMIFFLLSIAHL 364
           +++Y KQHV  +I  +C  ++   L  A+L
Sbjct: 65  IYIYGKQHVQSVIVPDCSTIVHIALCAAYL 94


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 362 FKCAIDSKKNIILWQLS*IKTVTCCLRYKNIITN*F*YIYSE**N*HSNTW*YITPV*HR 541
           F+  +D+ K  ++  +   K  TC + +   ITN F  IY +  + +  +W  IT V HR
Sbjct: 426 FRLLLDASKKTVVVHIGSSKD-TCVVNFSTPITNFFSKIYKDNPSLNPPSWHLITLV-HR 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,010
Number of Sequences: 5004
Number of extensions: 68041
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)