Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147...    30   2.4  
02_05_0939 + 32914936-32915055,32916674-32916823,32917160-329173...    29   4.3  
03_05_1164 - 30863063-30863095,30863308-30864777                       28   7.4  

>03_04_0067 -
           17013606-17013614,17013912-17013998,17014126-17014746,
           17015037-17015174,17015891-17016013,17016127-17016204
          Length = 351

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 662 DCLAEEPGMVLVPTHVASPDFQISSASNLFNKHTHL-THITFCVIQE 525
           DC  E  G   V +   +P FQ+++ S  FNK+ +L TH +F ++ E
Sbjct: 45  DCQPEFAGSSCVRSAATNP-FQLTNNSLPFNKYAYLTTHNSFAIVGE 90


>02_05_0939 + 32914936-32915055,32916674-32916823,32917160-32917305,
            32917396-32917552,32917695-32917753,32918180-32918291,
            32918901-32919050,32919180-32919316,32919977-32920123,
            32920197-32920298,32920674-32920731,32920840-32920941,
            32921905-32921942,32922031-32922157,32922228-32922401,
            32922542-32922628,32923838-32923947,32924654-32924714,
            32925338-32925515,32925628-32925833,32926108-32926227,
            32927202-32927423,32927708-32927847,32927976-32928087,
            32928254-32928304,32928384-32928473,32928630-32928800,
            32928897-32929049,32929860-32930036,32930131-32930268,
            32930363-32930433,32930837-32930936,32931156-32931212,
            32931301-32931357,32931451-32931531,32931614-32931696,
            32931831-32931966
          Length = 1459

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = -2

Query: 414  YDNCHNMIFFLLSIAHLKNYP*FYIKYLIMSGVGQFLQY*IKQFNKTII*QDICPF 247
            +DN  N +  L+S  H    P F+I+ LI + +  F+   I+ FN  ++ ++ C F
Sbjct: 1247 WDNIVNFLDLLMSTLHANYVPSFFIRKLI-TQLFSFIN--IQLFNSLLLRRECCTF 1299


>03_05_1164 - 30863063-30863095,30863308-30864777
          Length = 500

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 689 PPQSSNRRHDCLAEEPGMVLVPTHVASPDFQISSASNLFNKHTHLT 552
           PP SS +    L + PG  + P H+  P F      + F  H   T
Sbjct: 212 PPPSSEKPPLLLRDTPGPSIEPWHLKEPVFPEGKTPSEFRHHVKFT 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,899,139
Number of Sequences: 37544
Number of extensions: 374967
Number of successful extensions: 688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)