Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_33404| Best HMM Match : ShTK (HMM E-Value=2.1e-10)                  29   4.3  
SB_22262| Best HMM Match : Oleosin (HMM E-Value=0.98)                  29   5.7  
SB_32163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 172  LHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITSDSNYLYIHDE 38
            LH+ LQ ++C     R+KL  G   D +N+     ++N ++ HDE
Sbjct: 1652 LHDTLQ-HLCETCGQRVKLYSGYVDDPRNTDNAWLETNVVHFHDE 1695


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +1

Query: 577  KFDAEDI*KSGEAT*VGTKTIPGSSAKQSCLRFEDWGGRCT 699
            + D +DI K G  T   T T+ G    +  L    W G CT
Sbjct: 3407 RMDNKDINKDGVTTITSTNTLHGDHIYELTLNTGSWKGSCT 3447


>SB_33404| Best HMM Match : ShTK (HMM E-Value=2.1e-10)
          Length = 251

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 36  HSSCIYK*FESEV-IKIEFLISDFMPLLSFILSLTNTQMYVCKCSCSNFL 182
           H +C+Y    S+V +K +   ++ +  L  IL  TNT+ ++  CSC   L
Sbjct: 130 HVNCVY---HSDVRVKSDTCEANLIMSLDVILRYTNTKNFIRSCSCGQAL 176


>SB_22262| Best HMM Match : Oleosin (HMM E-Value=0.98)
          Length = 418

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = -3

Query: 716 LNHNCIVHRPPQSSNRRHDCLAEEPGMVLVPTHVASPDFQIS 591
           LN N  +++PP+++ RRH   A  P    VP+   +PD +IS
Sbjct: 15  LNLNEPMYKPPRTAMRRHS--ANVPKSRYVPSLYQNPDEEIS 54


>SB_32163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -1

Query: 160 LQTYICVLVKLRIKLSRGIKSDIKNSILITSDSNYLYIHDECFLKLINI 14
           ++TYI     L   LS  + + I +S+    D  YL+I   CF    N+
Sbjct: 4   IRTYIMENTDLTRALSSSVHTAICHSLQFADDIKYLWIQKACFHTFENL 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,007,846
Number of Sequences: 59808
Number of extensions: 472518
Number of successful extensions: 760
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)