Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          26   1.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   2.0  
DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor...    24   6.2  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   8.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   8.2  

>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 770 YRSHDINNTIPIHLET*SLNHNCIVH-RPPQSSNRR 666
           Y   D++NT+P++ +  +LN N +   +P Q ++R+
Sbjct: 175 YTLDDLSNTVPVNTQYNALNDNYVTSPQPSQVTSRQ 210


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 KLLHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITS 68
           KL+   +     + VK+++KLS+ I  ++KN I+ T+
Sbjct: 37  KLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTN 73


>DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor 22
           protein.
          Length = 467

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 626 PTHVASPDFQISSASNLFNKHTHLTHIT 543
           PTH+     +I+S  NL ++H    H T
Sbjct: 46  PTHMYRRKLKIASDVNLLDQHDSFYHTT 73


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 KLLHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITS 68
           KL+   + T   + V +++KLS+ I  ++KN I+ T+
Sbjct: 41  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTN 77


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 KLLHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITS 68
           KL+   + T   + V +++KLS+ I  ++KN I+ T+
Sbjct: 41  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTN 77


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,917
Number of Sequences: 2352
Number of extensions: 16430
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83576403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)