Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ...    29   3.8  

>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 689 PPQSSNRRHDCLAEEPGMVLVPTHVASPDFQISSASNLFNKHTH 558
           PPQ  +RR+  LA+      VPT ++  D   S+++ L N H+H
Sbjct: 235 PPQLGSRRNS-LAQSSNGPGVPTILSVADLCASNSAMLTNSHSH 277


>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 689 PPQSSNRRHDCLAEEPGMVLVPTHVASPDFQISSASNLFNKHTH 558
           PPQ  +RR+  LA+      VPT ++  D   S+++ L N H+H
Sbjct: 235 PPQLGSRRNS-LAQSSNGPGVPTILSVADLCASNSAMLTNSHSH 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,724,362
Number of Sequences: 27780
Number of extensions: 377424
Number of successful extensions: 744
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)