Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.61 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   7.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   10.0 

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.61
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 KLLHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITS 68
           KL+   +     + VK+++KLS+ I  ++KN I+ T+
Sbjct: 38  KLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTN 74


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 KLLHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITS 68
           KL+   + T   + V +++KLS+ I  ++KN I+ T+
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTN 78


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 178 KLLHEHLQTYICVLVKLRIKLSRGIKSDIKNSILITS 68
           KL+   + T   + V +++KLS+ I  ++KN I+ T+
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTN 78


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 136 VKLRIKLSRGIKSDIKNSILITS 68
           V+L +KLS+ I+ ++KN ++ T+
Sbjct: 61  VQLGLKLSQLIEMNLKNQVMTTN 83


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 118 LSRGIKSDIKNSILITSDSNYLY 50
           L + I  ++KN +L++++  YLY
Sbjct: 358 LIQNIIQEMKNDVLLSNNDVYLY 380


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 118 LSRGIKSDIKNSILITSDSNYLY 50
           L + I  ++KN +L++++  YLY
Sbjct: 396 LIQNIIQEMKNDVLLSNNDVYLY 418


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 516 DTLLLYNTERNMSQ 557
           D LLLYN  R MSQ
Sbjct: 216 DNLLLYNHARLMSQ 229


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 779 LSDYRSHDINNTIPIHL 729
           L+DY+  D++ T+P+ L
Sbjct: 668 LNDYKHKDVDVTLPLDL 684


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 718 LHVSRWIGIVLFMSWLR 768
           +HV  WIG    M++LR
Sbjct: 58  VHVMIWIGFGFLMTFLR 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,433
Number of Sequences: 438
Number of extensions: 5231
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)