Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00541
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03760.1 68415.m00336 steroid sulfotransferase, putative stro...    32   0.50 
At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o...    28   6.2  

>At2g03760.1 68415.m00336 steroid sulfotransferase, putative strong
           similarity to steroid sulfotransferases from [Brassica
           napus] GI:3420008, GI:3420004, GI:3420006; contains Pfam
           profile PF00685: Sulfotransferase domain
          Length = 326

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -3

Query: 695 HRPPQSSNRRHDCLAEEPGMVLVP----THVASPDFQISSASNLFNKHTHLTHIT 543
           H+ P SS+  H  L   P + LVP     +  SPDF  SS  +    +TH++H++
Sbjct: 92  HKFPVSSSGNHPLLVTNPHL-LVPFLEGVYYESPDFDFSSLPSPRLMNTHISHLS 145


>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit
           N-methyltransferase-related contains weak similarity to
           Swiss-Prot:P94026 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (Ribulose-
           bisphosphate-carboxylase]-lysine N-methyltransferase,
           RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
           [Nicotiana tabacum]
          Length = 483

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 630 QNHPWFFC*TIMPSV*RLGRPVYYTIVI*TSCLEVDWD 743
           Q HPW F   I+P    +G P++   +I ++  E+DWD
Sbjct: 132 QKHPWMFFPDIVP----IGHPIF--DIINSTDPEIDWD 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,128,237
Number of Sequences: 28952
Number of extensions: 330222
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)