Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00540
         (660 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0ZAL5 Cluster: Polymerase delta interacting protein 3;...    75   2e-12
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    35   1.5  

>UniRef50_Q0ZAL5 Cluster: Polymerase delta interacting protein 3;
           n=1; Bombyx mori|Rep: Polymerase delta interacting
           protein 3 - Bombyx mori (Silk moth)
          Length = 365

 Score = 74.9 bits (176), Expect = 2e-12
 Identities = 35/36 (97%), Positives = 35/36 (97%)
 Frame = +2

Query: 5   TRNSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL 112
           T NSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL
Sbjct: 330 TLNSSSRNNSKPALYSTNSNVEPDLSTFHKVLFSNL 365


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
 Frame = -3

Query: 631 YMHFTVFNFLNAVLILLNTN*K---IYFIVVVFCLFVNRHTFLITTIS*GILHNTLIISK 461
           Y H   +N  N  +IL N N K   IYF++  F LF N +  +       I  N      
Sbjct: 467 YYHIKFYNLYNKGIILNNNNNKYNVIYFLINYFNLFSNYYYKIYNNNYNFINSNYYFKKM 526

Query: 460 H*IYKNLRINPYILKKL--IARVF*QYKLQSLLF 365
           + I KN   N  IL KL  +  +F  YK +  LF
Sbjct: 527 NFILKNFN-NIQILNKLFYVNNIFIYYKYEKKLF 559


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 553,351,053
Number of Sequences: 1657284
Number of extensions: 10121686
Number of successful extensions: 21301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21288
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50000004659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)